Variant report

Variant	rs73717460
Chromosome Location	chr6:4155806-4155807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7772353	0.85[EUR][1000 genomes]
rs9503938	0.92[EUR][1000 genomes]
rs9503939	0.85[EUR][1000 genomes]
rs9503941	0.92[EUR][1000 genomes]
rs9503942	0.92[EUR][1000 genomes]
rs9503943	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422231	chr6:4100333-4233454	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2422457	chr6:4100333-4377396	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4137200-4156000	Weak transcription	Brain Anterior Caudate	brain
2	chr6:4152600-4156000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:4154000-4156000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:4155600-4156000	Enhancers	K562	blood
5	chr6:4155600-4156200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:4155800-4156000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:4155800-4156200	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:4155800-4156200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:4155800-4156200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:4155800-4156200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:4155800-4156200	Enhancers	Brain Cingulate Gyrus	brain
12	chr6:4155800-4156200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:4155800-4156200	Enhancers	HepG2	liver
14	chr6:4155800-4156200	Enhancers	HMEC	breast
15	chr6:4155800-4156200	Enhancers	NHEK	skin
16	chr6:4155800-4156600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:4155800-4156800	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links