Variant report

Variant	rs73717632
Chromosome Location	chr7:121940601-121940602
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr7:121939309-121947723	NT2-D1	testis:	n/a	n/a
2	CTBP2	chr7:121939603-121940700	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr7:121939332-121941685	SK-N-MC	brain:	n/a	n/a
4	POLR2A	chr7:121939705-121941759	SK-N-MC	brain:	n/a	n/a
5	SIN3A	chr7:121939586-121940811	H1-hESC	embryonic stem cell:	n/a	chr7:121940589-121940602
6	POLR2A	chr7:121940579-121943552	H1-neurons	neurons:	n/a	n/a
7	SUZ12	chr7:121939625-121941152	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:121940581-121940631	HRCEpiC	kidney:	n/a
2	chr7:121940581-121940631	HNPCEpiC	eye:	n/a
3	chr7:121940581-121940631	HAEpiC	amniotic membrane:	n/a
4	chr7:121940581-121940631	ECC-1	luminal epithelium:	n/a
5	chr7:121940581-121940631	T-47D	breast:	n/a
6	chr7:121940581-121940631	ovcar-3	ovarian:	n/a
7	chr7:121940581-121940631	GM12892	blood:	n/a
8	chr7:121940581-121940631	A549	lung:	n/a
9	chr7:121940581-121940631	NB4	blood:	n/a
10	chr7:121940581-121940631	HMEC	breast:	n/a
11	chr7:121940581-121940631	PrEC	prostate:	n/a
12	chr7:121940581-121940631	HCPEpiC	choroid plexus:	n/a
13	chr7:121940581-121940631	ProgFib	skin:	n/a
14	chr7:121940581-121940631	HEK293	kidney:	embryo
15	chr7:121940581-121940631	NHDF-neo	bronchial:	n/a
16	chr7:121940581-121940631	AoSMC	blood vessel:	n/a
17	chr7:121940581-121940631	HUVEC	blood vessel:	n/a
18	chr7:121940581-121940631	AG09309	skin:	n/a
19	chr7:121940581-121940631	HPAEpiC	pulmonary alveolar:	n/a
20	chr7:121940581-121940631	SK-N-SH_RA	brain:	n/a
21	chr7:121940581-121940631	SAEC	small airway:	n/a
22	chr7:121940581-121940631	HRPEpiC	eye:	n/a
23	chr7:121940581-121940631	NT2-D1	testis:	n/a
24	chr7:121940581-121940631	HIPEpiC	eye:	n/a
25	chr7:121940581-121940631	GM12891	blood:	n/a
26	chr7:121940581-121940631	K562	blood:	n/a
27	chr7:121940581-121940631	Hepatocyte	liver:	n/a
28	chr7:121940581-121940631	H1-hESC	embryonic stem cell:	embryo
29	chr7:121940581-121940631	HCF	heart:	n/a
30	chr7:121940581-121940631	HCM	heart:	n/a
31	chr7:121940581-121940631	U87	brain:	n/a
32	chr7:121940581-121940631	PFSK-1	brain:	n/a
33	chr7:121940581-121940631	BE2_C	brain:	n/a
34	chr7:121940581-121940631	GM19239	blood:	n/a
35	chr7:121940581-121940631	HCT-116	colon:	n/a
36	chr7:121940581-121940631	LNCaP	prostate:	n/a
37	chr7:121940581-121940631	Hela-S3	cervix:	n/a
38	chr7:121940581-121940631	PANC-1	pancreas:	n/a
39	chr7:121940581-121940631	GM06990	blood:	n/a
40	chr7:121940581-121940631	SK-N-SH	brain:	n/a
41	chr7:121940581-121940631	Caco-2	colon:	n/a
42	chr7:121940581-121940631	HepG2	liver:	n/a
43	chr7:121940581-121940631	GM12878	blood:	n/a
44	chr7:121940581-121940631	RPTEC	kidney:	n/a
45	chr7:121940581-121940631	BJ	skin:	n/a
46	chr7:121940581-121940631	HL-60	blood:	n/a
47	chr7:121940581-121940631	AG04450	lung:	fetal
48	chr7:121940581-121940631	NHBE	bronchial:	n/a
49	chr7:121940581-121940631	MCF10A-Er-Src	breast:	n/a
50	chr7:121940581-121940631	AG04449	skin:	fetal

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121940006..121941981-chr7:121942323..121944303,2	K562	blood:

No data

Variant related genes	Relation type
FEZF1-AS1	TF binding region
FEZF1-AS1	CpG island
ENSG00000230316	Chromatin interaction

rs_ID	r²[population]
rs10227160	1.00[AMR][1000 genomes]
rs10240886	1.00[AMR][1000 genomes]
rs10245489	1.00[AMR][1000 genomes]
rs73717631	1.00[AMR][1000 genomes]

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121939400-121940800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr7:121939600-121940800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr7:121939600-121940800	Bivalent Enhancer	Fetal Intestine Small	intestine
4	chr7:121939600-121941000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
5	chr7:121939600-121941000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
6	chr7:121939600-121941000	Bivalent Enhancer	Fetal Heart	heart
7	chr7:121939600-121941000	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr7:121939600-121941200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
9	chr7:121939600-121943000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr7:121939800-121940800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr7:121939800-121940800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:121939800-121940800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:121939800-121940800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:121939800-121940800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:121939800-121940800	Bivalent Enhancer	Fetal Stomach	stomach
16	chr7:121939800-121940800	Flanking Active TSS	Right Ventricle	heart
17	chr7:121939800-121940800	Bivalent/Poised TSS	HepG2	liver
18	chr7:121939800-121941000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr7:121939800-121941000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:121939800-121941000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
21	chr7:121939800-121941600	Bivalent Enhancer	Fetal Brain Male	brain
22	chr7:121939800-121947600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr7:121940000-121951000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:121940200-121940800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
25	chr7:121940200-121940800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:121940200-121940800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:121940200-121940800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
28	chr7:121940200-121941000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:121940200-121941000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
30	chr7:121940200-121941000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
31	chr7:121940200-121941000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
32	chr7:121940400-121940800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
33	chr7:121940400-121940800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
34	chr7:121940600-121940800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:121940600-121941000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
36	chr7:121940600-121941000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr7:121940600-121941000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
38	chr7:121940600-121941200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
39	chr7:121940600-121941200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
40	chr7:121940600-121941800	Weak transcription	Right Atrium	heart
41	chr7:121940600-121942000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links