Variant report

Variant	rs73717746
Chromosome Location	chr7:121544285-121544286
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs61667592	1.00[AMR][1000 genomes]
rs61732004	1.00[AMR][1000 genomes]
rs73433081	1.00[AMR][1000 genomes]
rs73717711	1.00[AMR][1000 genomes]
rs73717727	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717744	1.00[AMR][1000 genomes]
rs73717750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717779	1.00[AMR][1000 genomes]
rs7778337	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121522600-121550000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121523200-121552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:121528000-121550000	Weak transcription	Brain Germinal Matrix	brain
4	chr7:121531200-121558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:121532400-121549200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:121534800-121554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:121537600-121545200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:121540600-121545400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:121540800-121545200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:121541000-121552000	Weak transcription	NHEK	skin
11	chr7:121541200-121546600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:121541200-121552200	Weak transcription	Fetal Brain Female	brain
13	chr7:121541400-121549000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:121542200-121545200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:121542200-121553200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:121542400-121549000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:121543000-121544600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:121543200-121545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:121543600-121544800	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr7:121543600-121546000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:121543600-121549400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:121543800-121545200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links