Variant report

Variant	rs73718111
Chromosome Location	chr7:112413306-112413307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112411027..112413536-chr7:112428037..112430783,2	MCF-7	breast:
2	chr7:112409472..112411326-chr7:112412053..112414787,2	K562	blood:
3	chr7:112411103..112414672-chr7:112414950..112417349,4	K562	blood:

Variant related genes	Relation type
ENSG00000146802	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56354724	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73718109	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73718136	1.00[ASN][1000 genomes]
rs7790563	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv2752144	chr7:112398372-112499924	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv1794529	chr7:112400060-112588376	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112385400-112422400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:112389000-112422800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:112390200-112422800	Weak transcription	Thymus	Thymus
4	chr7:112391600-112418200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:112393600-112429800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:112395200-112422600	Weak transcription	Right Ventricle	heart
7	chr7:112395600-112422400	Weak transcription	Aorta	Aorta
8	chr7:112396200-112428600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:112397000-112418000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:112397000-112428000	Weak transcription	Fetal Intestine Small	intestine
11	chr7:112397400-112422200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:112397600-112429600	Weak transcription	Pancreas	Pancrea
13	chr7:112398800-112428800	Weak transcription	Gastric	stomach
14	chr7:112400000-112426800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:112400200-112422400	Weak transcription	Left Ventricle	heart
16	chr7:112400200-112429000	Weak transcription	HSMM	muscle
17	chr7:112400600-112428600	Weak transcription	Brain Substantia Nigra	brain
18	chr7:112403400-112428600	Weak transcription	Fetal Stomach	stomach
19	chr7:112404800-112422400	Weak transcription	Fetal Thymus	thymus
20	chr7:112404800-112422400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:112404800-112427000	Weak transcription	Small Intestine	intestine
22	chr7:112404800-112428800	Weak transcription	Spleen	Spleen
23	chr7:112405000-112421200	Weak transcription	HUVEC	blood vessel
24	chr7:112405000-112423400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:112405200-112422400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr7:112405200-112422600	Weak transcription	Liver	Liver
27	chr7:112405400-112419800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr7:112405400-112423200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr7:112405400-112423400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr7:112405400-112428400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr7:112405600-112420000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr7:112405600-112422400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr7:112405600-112428800	Weak transcription	Osteobl	bone
34	chr7:112405800-112414800	Weak transcription	Brain Angular Gyrus	brain
35	chr7:112405800-112421400	Weak transcription	Stomach Mucosa	stomach
36	chr7:112405800-112422800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr7:112405800-112422800	Weak transcription	Lung	lung
38	chr7:112405800-112422800	Weak transcription	K562	blood
39	chr7:112405800-112428200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr7:112405800-112428800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:112406000-112422600	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:112406000-112428800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr7:112406000-112429000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr7:112406200-112418000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr7:112406200-112422600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:112406200-112422800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr7:112406400-112422400	Weak transcription	Psoas Muscle	Psoas
48	chr7:112406400-112422800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr7:112406400-112428800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr7:112406400-112429000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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