Variant report

Variant	rs73718401
Chromosome Location	chr6:5736497-5736498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5725977..5728303-chr6:5734560..5736666,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56167565	1.00[AMR][1000 genomes]
rs56274944	0.85[AMR][1000 genomes]
rs73720205	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522836	chr6:5727250-5737122	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5723000-5744200	Weak transcription	Right Ventricle	heart
2	chr6:5725000-5737000	Weak transcription	Primary T cells from cord blood	blood
3	chr6:5725200-5749200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:5726000-5749400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:5729600-5744800	Weak transcription	Esophagus	oesophagus
7	chr6:5729800-5739800	Weak transcription	Primary B cells from cord blood	blood
8	chr6:5729800-5744200	Weak transcription	Left Ventricle	heart
9	chr6:5730000-5743000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:5730800-5746600	Weak transcription	Fetal Stomach	stomach
11	chr6:5732600-5740200	Weak transcription	HepG2	liver
12	chr6:5732600-5749200	Weak transcription	Spleen	Spleen
13	chr6:5734800-5741600	Weak transcription	Aorta	Aorta
14	chr6:5734800-5744400	Weak transcription	Right Atrium	heart
15	chr6:5735600-5736600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:5736000-5736800	Enhancers	Fetal Heart	heart
17	chr6:5736200-5736600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:5736200-5736600	Enhancers	Gastric	stomach
19	chr6:5736200-5736800	Enhancers	Fetal Muscle Leg	muscle
20	chr6:5736200-5736800	Enhancers	Pancreas	Pancrea
21	chr6:5736400-5736600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:5736400-5736600	Enhancers	Lung	lung
23	chr6:5736400-5736600	Enhancers	Ovary	ovary
24	chr6:5736400-5736800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:5736400-5737000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:5736400-5743600	Weak transcription	Fetal Muscle Trunk	muscle

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