Variant report

Variant	rs73721598
Chromosome Location	chr7:128888004-128888005
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128886315..128888707-chr7:128895408..128897456,2	K562	blood:
2	chr7:128887131..128889501-chr7:128893750..128895547,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs55734328	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55914741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55977652	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56026216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56056372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56253542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57161831	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57520263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57603850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57666606	0.81[AFR][1000 genomes]
rs57885173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58167497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58533709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59359128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59506890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60439130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60474507	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60765573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60811378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61039599	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61672005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721564	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721565	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721566	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722934	1.00[AMR][1000 genomes]
rs73722935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722950	0.91[AFR][1000 genomes]
rs73722954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031284	chr7:128866118-128910506	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3349195	chr7:128887559-128918489	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128866000-128902200	Weak transcription	Gastric	stomach
2	chr7:128866200-128898600	Weak transcription	Thymus	Thymus
3	chr7:128866400-128891400	Weak transcription	Fetal Stomach	stomach
4	chr7:128866400-128899000	Weak transcription	Ovary	ovary
5	chr7:128866600-128901400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:128866800-128889600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:128867000-128898400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr7:128867200-128909800	Weak transcription	Primary B cells from cord blood	blood
9	chr7:128868600-128897200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:128872800-128892000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:128876400-128889800	Weak transcription	Fetal Intestine Small	intestine
12	chr7:128878800-128897000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr7:128880400-128889800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:128881000-128892000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:128881000-128898800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:128882000-128899600	Weak transcription	Left Ventricle	heart
17	chr7:128884800-128898800	Weak transcription	Primary T cells from cord blood	blood
18	chr7:128885000-128890000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:128885600-128898600	Weak transcription	Brain Germinal Matrix	brain
20	chr7:128886600-128889800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:128887200-128898600	Weak transcription	NHEK	skin
22	chr7:128887400-128888200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr7:128887600-128888200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr7:128887600-128892400	Weak transcription	Pancreas	Pancrea
25	chr7:128888000-128888200	Enhancers	H9 Cell Line	embryonic stem cell
26	chr7:128888000-128888200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr7:128888000-128891800	Weak transcription	Brain Anterior Caudate	brain

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