Variant report

Variant	rs73721806
Chromosome Location	chr6:11768341-11768342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:11768296-11772928	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:11766544..11768808-chr6:12011516..12013304,2	MCF-7	breast:
2	chr6:11766846..11771135-chr6:12008831..12011747,3	K562	blood:
3	chr6:11767330..11770016-chr6:11806756..11808382,2	MCF-7	breast:
4	chr6:11766943..11769804-chr6:12011580..12013984,2	MCF-7	breast:

Variant related genes	Relation type
ADTRP	TF binding region
ENSG00000095951	Chromatin interaction
ENSG00000111863	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55647423	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11755800-11768400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:11759400-11769600	Weak transcription	Lung	lung
3	chr6:11760600-11770600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:11762600-11770600	Weak transcription	Spleen	Spleen
5	chr6:11763000-11769200	Weak transcription	Colonic Mucosa	Colon
6	chr6:11763200-11773400	Enhancers	HUVEC	blood vessel
7	chr6:11764400-11770600	Weak transcription	Esophagus	oesophagus
8	chr6:11764400-11770600	Weak transcription	Left Ventricle	heart
9	chr6:11764400-11770600	Weak transcription	Right Atrium	heart
10	chr6:11764800-11769600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:11764800-11769600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:11765000-11769000	Weak transcription	Small Intestine	intestine
13	chr6:11765000-11770600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:11765400-11768400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:11765800-11768400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:11765800-11768400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:11765800-11770200	Enhancers	Hela-S3	cervix
18	chr6:11765800-11770600	Enhancers	HSMM	muscle
19	chr6:11765800-11770600	Enhancers	Osteobl	bone
20	chr6:11765800-11773000	Enhancers	NH-A	brain
21	chr6:11765800-11773600	Enhancers	NHDF-Ad	bronchial
22	chr6:11765800-11773600	Enhancers	NHLF	lung
23	chr6:11766000-11770800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:11766200-11770800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:11766400-11769800	Enhancers	Gastric	stomach
26	chr6:11766600-11769200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:11766600-11770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:11766800-11770600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:11766800-11771800	Enhancers	Fetal Intestine Small	intestine
30	chr6:11766800-11773000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:11767000-11771800	Enhancers	Stomach Mucosa	stomach
32	chr6:11767200-11768800	Weak transcription	Fetal Stomach	stomach
33	chr6:11767200-11769400	Weak transcription	Placenta	Placenta
34	chr6:11767200-11769600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:11767200-11770600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:11767200-11770800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:11767400-11769400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:11767400-11770400	Weak transcription	Adipose Nuclei	Adipose
39	chr6:11767400-11770600	Weak transcription	Fetal Lung	lung
40	chr6:11767600-11768400	Weak transcription	Fetal Intestine Large	intestine
41	chr6:11767600-11768800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:11767600-11769400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:11767600-11770400	Weak transcription	Pancreas	Pancrea
44	chr6:11767600-11771000	Enhancers	HSMMtube	muscle
45	chr6:11767600-11771200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:11767800-11769000	Weak transcription	K562	blood
47	chr6:11767800-11769000	Genic enhancers	NHEK	skin
48	chr6:11767800-11769200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr6:11767800-11770200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:11767800-11770400	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links