Variant report

Variant	rs73722765
Chromosome Location	chr6:12313122-12313123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12311955..12317813-chr6:12323964..12327057,7	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73722768	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12296600-12314400	Weak transcription	Spleen	Spleen
2	chr6:12311600-12314200	Weak transcription	Pancreas	Pancrea
3	chr6:12311800-12313600	Weak transcription	Stomach Mucosa	stomach
4	chr6:12312000-12313200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:12312200-12315200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:12312800-12313400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:12312800-12313600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:12312800-12315200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:12313000-12313200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:12313000-12313200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:12313000-12313200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:12313000-12313200	Enhancers	NH-A	brain
13	chr6:12313000-12313600	Enhancers	NHEK	skin
14	chr6:12313000-12313800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:12313000-12313800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:12313000-12313800	Flanking Active TSS	A549	lung
17	chr6:12313000-12313800	Enhancers	HUVEC	blood vessel
18	chr6:12313000-12314000	Enhancers	Osteobl	bone
19	chr6:12313000-12314400	Enhancers	Fetal Heart	heart
20	chr6:12313000-12314400	Enhancers	HMEC	breast
21	chr6:12313000-12314600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:12313000-12315000	Enhancers	Placenta	Placenta
23	chr6:12313000-12315200	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links