Variant report

Variant	rs73722766
Chromosome Location	chr6:12315216-12315217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:12315099-12315356	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr6:12313394-12315836	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr6:12315041-12315302	IMR90	lung:	n/a	chr6:12315180-12315191
4	STAT3	chr6:12314343-12315660	MCF10A-Er-Src	breast:	n/a	n/a
5	SP1	chr6:12313458-12315379	A549	lung:	n/a	n/a
6	TCF12	chr6:12313310-12315311	A549	lung:	n/a	n/a
7	STAT3	chr6:12314395-12315786	MCF10A-Er-Src	breast:	n/a	n/a
8	CEBPB	chr6:12315035-12315324	HepG2	liver:	n/a	chr6:12315180-12315191
9	BCL3	chr6:12313985-12315381	A549	lung:	n/a	n/a
10	BCL3	chr6:12314288-12315222	A549	lung:	n/a	n/a
11	NR3C1	chr6:12314940-12315330	A549	lung:	n/a	n/a
12	JUND	chr6:12312838-12315472	T-47D	breast:	n/a	chr6:12314335-12314344
13	SP1	chr6:12313995-12315330	A549	lung:	n/a	n/a
14	NR3C1	chr6:12314182-12315309	A549	lung:	n/a	chr6:12314670-12314679 chr6:12314685-12314699
15	FOS	chr6:12314350-12315944	MCF10A-Er-Src	breast:	n/a	n/a
16	FOS	chr6:12315031-12315408	MCF10A-Er-Src	breast:	n/a	n/a
17	CEBPB	chr6:12314224-12315475	A549	lung:	n/a	chr6:12315180-12315191
18	MAX	chr6:12313971-12315237	A549	lung:	n/a	n/a
19	GATA3	chr6:12312966-12315302	T-47D	breast:	n/a	n/a
20	CEBPB	chr6:12314887-12315345	A549	lung:	n/a	chr6:12315180-12315191
21	EP300	chr6:12313480-12315309	A549	lung:	n/a	chr6:12314326-12314334 chr6:12314333-12314347
22	EP300	chr6:12312881-12315324	T-47D	breast:	n/a	chr6:12314326-12314334 chr6:12314333-12314347
23	POLR2A	chr6:12313261-12315813	MCF10A-Er-Src	breast:	n/a	n/a
24	CEBPB	chr6:12315039-12315331	K562	blood:	n/a	chr6:12315180-12315191
25	FOSL2	chr6:12314190-12315308	A549	lung:	n/a	chr6:12314335-12314344
26	NR3C1	chr6:12314948-12315354	A549	lung:	n/a	n/a
27	CEBPB	chr6:12315048-12315338	Hela-S3	cervix:	n/a	chr6:12315180-12315191
28	CEBPB	chr6:12314284-12315370	A549	lung:	n/a	chr6:12315180-12315191
29	STAT3	chr6:12315128-12315445	MCF10A-Er-Src	breast:	n/a	n/a
30	NR3C1	chr6:12314093-12315365	A549	lung:	n/a	chr6:12314670-12314679 chr6:12314685-12314699
31	STAT3	chr6:12315063-12316204	MCF10A-Er-Src	breast:	n/a	n/a
32	FOS	chr6:12314415-12315815	MCF10A-Er-Src	breast:	n/a	n/a
33	MAX	chr6:12313374-12315362	A549	lung:	n/a	n/a
34	EP300	chr6:12313409-12315400	A549	lung:	n/a	chr6:12314326-12314334 chr6:12314333-12314347
35	NR3C1	chr6:12315044-12315275	A549	lung:	n/a	n/a
36	NR3C1	chr6:12314992-12315339	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:12285346..12288337-chr6:12314875..12317464,2	MCF-7	breast:
2	chr6:12311955..12317813-chr6:12323964..12327057,7	MCF-7	breast:
3	chr6:12313605..12316031-chr6:12327791..12330633,2	MCF-7	breast:
4	chr6:12315191..12317031-chr6:12318499..12320093,2	MCF-7	breast:
5	chr6:12313162..12315409-chr6:12364413..12366976,2	MCF-7	breast:
6	chr6:12292182..12294128-chr6:12314408..12315965,2	MCF-7	breast:

Variant related genes	Relation type
SUMO2P12	TF binding region
ENSG00000218893	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16872657	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16872662	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56058129	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12313200-12315600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:12314400-12315600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:12314800-12315400	Flanking Active TSS	A549	lung
4	chr6:12314800-12319000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:12315000-12315400	Enhancers	HMEC	breast
6	chr6:12315000-12315400	Enhancers	HUVEC	blood vessel
7	chr6:12315000-12315800	Enhancers	NHEK	skin
8	chr6:12315200-12315800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:12315200-12316200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:12315200-12319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:12315200-12319000	Weak transcription	Lung	lung
12	chr6:12315200-12327800	Weak transcription	Placenta Amnion	Placenta Amnion

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