Variant report

Variant	rs73723286
Chromosome Location	chr6:13373029-13373030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13371659..13373968-chr6:13405951..13408760,2	K562	blood:
2	chr6:13370949..13373369-chr6:13573069..13576049,2	K562	blood:
3	chr6:13370869..13372385-chr6:13372933..13375526,2	K562	blood:

Variant related genes	Relation type
ENSG00000124523	Chromatin interaction
ENSG00000145990	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60272175	0.82[AFR][1000 genomes]
rs61510457	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61533038	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6933761	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73723285	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723287	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73723289	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73723295	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1034016	chr6:13248122-13418225	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13355600-13383400	Weak transcription	A549	lung
2	chr6:13356200-13373600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:13356200-13378200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:13361600-13378200	Weak transcription	Fetal Thymus	thymus
5	chr6:13365000-13377800	Weak transcription	Primary B cells from cord blood	blood
6	chr6:13365400-13379800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:13365600-13378000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:13365800-13373800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:13365800-13373800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:13365800-13373800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:13365800-13377600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:13365800-13378800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:13365800-13378800	Weak transcription	Gastric	stomach
14	chr6:13365800-13379400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:13365800-13379600	Weak transcription	Brain Germinal Matrix	brain
16	chr6:13365800-13380600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:13365800-13385400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:13366000-13374600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:13366000-13378200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:13366000-13378200	Weak transcription	Colonic Mucosa	Colon
21	chr6:13366000-13378600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:13366000-13380600	Weak transcription	Ovary	ovary
23	chr6:13366000-13382800	Weak transcription	Liver	Liver
24	chr6:13366000-13386800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:13367600-13374400	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr6:13368000-13404600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:13368200-13381000	Weak transcription	NH-A	brain
28	chr6:13368400-13373800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:13368400-13375800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:13368400-13386600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:13368600-13373600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:13368600-13375600	Weak transcription	Esophagus	oesophagus
33	chr6:13368600-13377600	Weak transcription	Aorta	Aorta
34	chr6:13368800-13373400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:13368800-13373800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:13368800-13375400	Weak transcription	Psoas Muscle	Psoas
37	chr6:13369600-13373800	Weak transcription	NHLF	lung
38	chr6:13369800-13373200	Enhancers	Brain Hippocampus Middle	brain
39	chr6:13370600-13374400	Enhancers	Fetal Heart	heart
40	chr6:13371000-13374400	Enhancers	Adipose Nuclei	Adipose
41	chr6:13371200-13373600	Enhancers	Placenta	Placenta
42	chr6:13371400-13373400	Enhancers	Fetal Muscle Leg	muscle
43	chr6:13371600-13373200	Enhancers	Right Atrium	heart
44	chr6:13371600-13373600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:13371600-13374400	Enhancers	Stomach Smooth Muscle	stomach
46	chr6:13371600-13375400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:13371800-13373200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:13371800-13373200	Enhancers	Fetal Muscle Trunk	muscle
49	chr6:13371800-13373400	Enhancers	Right Ventricle	heart
50	chr6:13371800-13375200	Weak transcription	NHEK	skin

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