Variant report

Variant	rs73724437
Chromosome Location	chr6:15547989-15547990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15544544..15546827-chr6:15547014..15548518,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58813262	1.00[AFR][1000 genomes]
rs60034761	1.00[AFR][1000 genomes]
rs60425457	1.00[AFR][1000 genomes]
rs73724446	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15524400-15549400	Weak transcription	Hela-S3	cervix
2	chr6:15524800-15549800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:15525000-15553400	Weak transcription	Ovary	ovary
4	chr6:15529400-15549800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:15532600-15549800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:15533600-15551000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:15534000-15551600	Weak transcription	Aorta	Aorta
8	chr6:15534400-15551000	Weak transcription	K562	blood
9	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
10	chr6:15537000-15549800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:15537000-15550000	Weak transcription	Psoas Muscle	Psoas
12	chr6:15537000-15551000	Weak transcription	Left Ventricle	heart
13	chr6:15537000-15551600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:15537000-15551800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:15537000-15554400	Weak transcription	Fetal Intestine Large	intestine
16	chr6:15539800-15554000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:15540000-15550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:15540000-15551800	Weak transcription	Gastric	stomach
19	chr6:15540200-15551000	Weak transcription	Pancreas	Pancrea
20	chr6:15544200-15551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:15544800-15551600	Weak transcription	Primary T cells from cord blood	blood
22	chr6:15545000-15550800	Weak transcription	Primary B cells from cord blood	blood
23	chr6:15545000-15550800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:15545000-15554200	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr6:15545200-15549600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr6:15545200-15550800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:15545400-15551400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:15546000-15548800	Enhancers	Fetal Stomach	stomach
29	chr6:15546200-15549800	Weak transcription	Right Ventricle	heart
30	chr6:15546200-15551000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr6:15546400-15551000	Weak transcription	Right Atrium	heart
32	chr6:15546600-15548200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:15546600-15551600	Weak transcription	Lung	lung
34	chr6:15546800-15548200	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr6:15546800-15548200	Enhancers	Fetal Lung	lung
36	chr6:15546800-15549000	Enhancers	HUVEC	blood vessel
37	chr6:15547000-15548000	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr6:15547000-15548000	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr6:15547000-15548000	Enhancers	Brain Anterior Caudate	brain
40	chr6:15547000-15549800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:15547000-15549800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:15547000-15551000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:15547400-15548000	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr6:15547400-15548000	Enhancers	Fetal Muscle Leg	muscle
45	chr6:15547400-15548000	Enhancers	Rectal Smooth Muscle	rectum
46	chr6:15547400-15548000	Enhancers	NHLF	lung
47	chr6:15547400-15548200	Enhancers	Fetal Kidney	kidney
48	chr6:15547400-15563200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:15547600-15548000	Enhancers	Fetal Heart	heart
50	chr6:15547800-15548000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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