Variant report

Variant	rs73725564
Chromosome Location	chr7:149417862-149417863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:149417614-149418032	GM12878	blood:	n/a	n/a
2	CHD2	chr7:149416995-149418417	GM12878	blood:	n/a	n/a
3	EP300	chr7:149417756-149417940	HepG2	liver:	n/a	chr7:149417886-149417902
4	ZNF263	chr7:149416112-149418030	K562	blood:	n/a	chr7:149417247-149417268 chr7:149417308-149417329
5	EBF1	chr7:149416935-149418416	GM12878	blood:	n/a	chr7:149417657-149417670 chr7:149417657-149417668 chr7:149417659-149417668 chr7:149417658-149417668
6	EBF1	chr7:149417454-149417943	GM12878	blood:	n/a	chr7:149417657-149417670 chr7:149417657-149417668 chr7:149417659-149417668 chr7:149417658-149417668
7	NR3C1	chr7:149417628-149417998	A549	lung:	n/a	chr7:149417693-149417700
8	NR3C1	chr7:149417602-149417939	A549	lung:	n/a	chr7:149417693-149417700
9	EP300	chr7:149416823-149418059	GM12878	blood:	n/a	chr7:149417886-149417902
10	EP300	chr7:149417578-149418040	GM12878	blood:	n/a	chr7:149417886-149417902
11	RFX5	chr7:149417824-149418052	GM12878	blood:	n/a	n/a
12	ZNF143	chr7:149417075-149417888	GM12878	blood:	n/a	n/a
13	RCOR1	chr7:149417206-149417926	GM12878	blood:	n/a	n/a
14	TBL1XR1	chr7:149417622-149417882	GM12878	blood:	n/a	n/a
15	MAZ	chr7:149417541-149418087	GM12878	blood:	n/a	n/a
16	EP300	chr7:149417689-149417955	GM12878	blood:	n/a	chr7:149417886-149417902
17	RELA	chr7:149417001-149417897	GM18951	blood:	n/a	n/a
18	BHLHE40	chr7:149417032-149418330	GM12878	blood:	n/a	chr7:149418189-149418205
19	RFX5	chr7:149417300-149418367	SK-N-SH	brain:	n/a	n/a
20	POLR2A	chr7:149416036-149417912	K562	blood:	n/a	n/a
21	POLR2A	chr7:149417506-149417957	HepG2	liver:	n/a	n/a
22	MAX	chr7:149417660-149417946	GM12878	blood:	n/a	n/a
23	CCNT2	chr7:149417726-149418191	K562	blood:	n/a	n/a
24	EBF1	chr7:149417426-149417968	GM12878	blood:	n/a	chr7:149417657-149417670 chr7:149417657-149417668 chr7:149417659-149417668 chr7:149417658-149417668
25	MXI1	chr7:149417062-149417945	GM12878	blood:	n/a	n/a
26	RELA	chr7:149416992-149417915	GM19099	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:149319991..149321797-chr7:149416838..149419034,2	MCF-7	breast:
2	chr7:149415554..149419677-chr7:149423548..149428331,6	K562	blood:

Variant related genes	Relation type
KRBA1	TF binding region
ENSG00000133619	Chromatin interaction
ENSG00000133624	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55743072	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55953147	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56374122	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57484717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60962760	1.00[AMR][1000 genomes]
rs73725553	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725554	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725557	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725561	0.84[AFR][1000 genomes]
rs73725563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725565	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725566	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725567	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021849	chr7:149230929-149422239	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1023901	chr7:149364044-149747442	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv539191	chr7:149364044-149747442	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv469576	chr7:149379626-149563233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1031581	chr7:149386249-149570178	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv539192	chr7:149386249-149570178	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv465199	chr7:149398065-149462621	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv608979	chr7:149398065-149462621	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149412800-149418000	Weak transcription	Aorta	Aorta
2	chr7:149412800-149418600	Weak transcription	Primary B cells from cord blood	blood
3	chr7:149412800-149421400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:149412800-149438800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:149413000-149418000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:149413000-149418000	Weak transcription	Small Intestine	intestine
7	chr7:149413000-149418200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:149413000-149418200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr7:149413000-149424000	Weak transcription	Fetal Kidney	kidney
10	chr7:149413000-149433200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:149413200-149418000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:149413200-149418000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:149413200-149418400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:149413200-149421800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:149413200-149426200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:149413200-149432000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:149413200-149433600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr7:149413400-149418000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:149413400-149418200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:149413400-149418200	Weak transcription	Fetal Thymus	thymus
21	chr7:149413400-149418400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr7:149413400-149418600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:149413400-149419200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr7:149413400-149423000	Weak transcription	Colonic Mucosa	Colon
25	chr7:149413400-149424600	Weak transcription	HUVEC	blood vessel
26	chr7:149413400-149433400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr7:149413600-149418000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr7:149413800-149418000	Weak transcription	Fetal Lung	lung
29	chr7:149413800-149419800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:149414000-149430200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr7:149414600-149418400	Enhancers	Fetal Heart	heart
32	chr7:149414800-149438800	Weak transcription	Fetal Brain Male	brain
33	chr7:149415800-149418200	Enhancers	Left Ventricle	heart
34	chr7:149415800-149421800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr7:149416000-149418000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:149416000-149418000	Enhancers	Psoas Muscle	Psoas
37	chr7:149416000-149418000	Enhancers	A549	lung
38	chr7:149416000-149418000	Enhancers	NHDF-Ad	bronchial
39	chr7:149416000-149418200	Genic enhancers	Stomach Smooth Muscle	stomach
40	chr7:149416000-149418400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:149416000-149418400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr7:149416000-149418600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:149416000-149418600	Genic enhancers	Fetal Muscle Trunk	muscle
44	chr7:149416000-149418800	Genic enhancers	Fetal Muscle Leg	muscle
45	chr7:149416000-149431200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:149416000-149431400	Strong transcription	Ovary	ovary
47	chr7:149416000-149431600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:149416000-149431800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr7:149416000-149432000	Strong transcription	Fetal Intestine Small	intestine
50	chr7:149416000-149432400	Strong transcription	Primary T cells from cord blood	blood

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