Variant report

Variant	rs73726543
Chromosome Location	chr6:15305675-15305676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15251586..15254356-chr6:15305390..15308009,2	K562	blood:
2	chr6:15305494..15307025-chr6:15307899..15310326,2	K562	blood:
3	chr6:15246564..15248126-chr6:15304464..15306021,2	K562	blood:
4	chr6:15303539..15305242-chr6:15305641..15308012,2	K562	blood:
5	chr6:15243069..15245531-chr6:15303804..15307627,3	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55646638	1.00[AMR][1000 genomes]
rs57288790	1.00[AMR][1000 genomes]
rs57418009	1.00[AMR][1000 genomes]
rs58721450	1.00[AMR][1000 genomes]
rs58882621	1.00[AMR][1000 genomes]
rs59986347	1.00[AMR][1000 genomes]
rs73724404	1.00[AMR][1000 genomes]
rs73724405	1.00[AMR][1000 genomes]
rs73724406	1.00[AMR][1000 genomes]
rs73724408	1.00[AMR][1000 genomes]
rs73724409	1.00[AMR][1000 genomes]
rs73724410	1.00[AMR][1000 genomes]
rs73724412	1.00[AMR][1000 genomes]
rs73724743	1.00[AMR][1000 genomes]
rs73724751	1.00[AMR][1000 genomes]
rs73726555	1.00[AMR][1000 genomes]
rs73726557	1.00[AMR][1000 genomes]
rs73726560	1.00[AMR][1000 genomes]
rs73726561	1.00[AMR][1000 genomes]
rs73726565	1.00[AMR][1000 genomes]
rs73726566	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15290600-15309400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:15295800-15311400	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:15300200-15308400	Weak transcription	A549	lung
4	chr6:15300200-15312400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:15300400-15308000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:15300400-15312600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:15300800-15308200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:15300800-15308400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:15300800-15308600	Weak transcription	NHEK	skin
10	chr6:15300800-15310600	Weak transcription	HSMM	muscle
11	chr6:15301000-15307600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:15301200-15312400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:15301200-15313000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:15301200-15313400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:15301800-15308000	Weak transcription	Fetal Kidney	kidney
16	chr6:15302400-15305800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:15302400-15306000	Enhancers	Psoas Muscle	Psoas
18	chr6:15302400-15308800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:15302600-15309800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr6:15303200-15306000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:15303200-15306400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:15303400-15305800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr6:15303400-15305800	Enhancers	Pancreas	Pancrea
24	chr6:15303400-15305800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr6:15303400-15306000	Enhancers	Primary T cells fromperipheralblood	blood
26	chr6:15303400-15306000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:15303400-15306000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:15303400-15306000	Enhancers	Brain Anterior Caudate	brain
29	chr6:15303400-15306000	Enhancers	Right Atrium	heart
30	chr6:15303400-15306000	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr6:15303400-15306200	Enhancers	H1 Cell Line	embryonic stem cell
32	chr6:15303400-15306200	Enhancers	Stomach Mucosa	stomach
33	chr6:15303400-15306400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:15303400-15306400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:15303400-15306400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:15303400-15306400	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr6:15303400-15306400	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr6:15303400-15306400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:15303400-15306400	Enhancers	Brain Hippocampus Middle	brain
40	chr6:15303400-15306400	Enhancers	Brain Substantia Nigra	brain
41	chr6:15303400-15306400	Enhancers	Fetal Intestine Large	intestine
42	chr6:15303400-15306400	Enhancers	Fetal Lung	lung
43	chr6:15303400-15306600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:15303400-15306600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:15303400-15306600	Enhancers	Duodenum Mucosa	Duodenum
46	chr6:15303400-15306800	Enhancers	Small Intestine	intestine
47	chr6:15303400-15307000	Enhancers	Fetal Intestine Small	intestine
48	chr6:15303400-15311400	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr6:15303400-15311400	Enhancers	Primary B cells from peripheral blood	blood
50	chr6:15303600-15306000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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