Variant report

Variant	rs73727129
Chromosome Location	chr7:150941137-150941138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr7:150940959-150941740	GM12878	blood:	n/a	n/a
2	SMC3	chr7:150940796-150943624	SK-N-SH	brain:	n/a	chr7:150941980-150941987 chr7:150941567-150941581 chr7:150941940-150941947
3	CTCF	chr7:150940291-150943350	SK-N-SH	brain:	n/a	chr7:150941938-150941951 chr7:150940479-150940497 chr7:150941560-150941581 chr7:150941941-150941954 chr7:150940585-150940598 chr7:150941920-150941929 chr7:150941977-150941986
4	POLR2A	chr7:150940719-150941426	U87	brain:	n/a	n/a
5	CTCF	chr7:150941080-150941230	AG04449	skin:	n/a	n/a
6	POLR2A	chr7:150935782-150941408	U87	brain:	n/a	n/a
7	POLR2A	chr7:150941077-150942207	IMR90	lung:	n/a	n/a
8	POLR2A	chr7:150932457-150941238	U87	brain:	n/a	n/a
9	POLR2A	chr7:150940769-150941426	U87	brain:	n/a	n/a
10	MAZ	chr7:150941113-150942163	IMR90	lung:	n/a	n/a
11	CTCF	chr7:150941080-150941230	HUVEC	blood vessel:	n/a	n/a
12	ZNF263	chr7:150940920-150941537	HEK293-T-REx	kidney:	n/a	chr7:150941123-150941144
13	RAD21	chr7:150940770-150943041	SK-N-SH	brain:	n/a	chr7:150941937-150941950 chr7:150941591-150941603 chr7:150941563-150941582 chr7:150941940-150941954

No.	Distal block	Cell Line	Cell type
1	chr7:150869379..150870234-chr7:150941055..150942048,8	MCF-7	breast:
2	chr7:150888388..150889316-chr7:150941010..150942053,3	K562	blood:
3	chr7:150923495..150927436-chr7:150940006..150942925,4	MCF-7	breast:
4	chr7:150901645..150902197-chr7:150940945..150941682,2	K562	blood:
5	chr7:150869400..150870347-chr7:150941097..150942121,7	K562	blood:
6	chr7:150938571..150942838-chr7:150950941..150954111,4	MCF-7	breast:
7	chr7:150865018..150866330-chr7:150941109..150942155,6	K562	blood:
8	chr7:150819780..150822617-chr7:150940406..150943194,3	MCF-7	breast:

Variant related genes	Relation type
SMARCD3	TF binding region
ENSG00000082014	Chromatin interaction
ENSG00000133612	Chromatin interaction
ENSG00000033050	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56776814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73727121	1.00[AMR][1000 genomes]
rs73727124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
5	nsv889488	chr7:150926775-150955765	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150931000-150944600	Weak transcription	Fetal Kidney	kidney
2	chr7:150931600-150944400	Weak transcription	Hela-S3	cervix
3	chr7:150932800-150942000	Weak transcription	Psoas Muscle	Psoas
4	chr7:150936400-150941200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:150936400-150942200	Weak transcription	HMEC	breast
6	chr7:150936800-150941800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:150937400-150941200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:150937600-150941200	Weak transcription	Right Atrium	heart
9	chr7:150938600-150941800	Weak transcription	NH-A	brain
10	chr7:150939200-150941600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:150939200-150941600	Weak transcription	A549	lung
12	chr7:150939200-150942000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:150939200-150942000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:150939400-150941800	Enhancers	Fetal Brain Male	brain
15	chr7:150939400-150941800	Enhancers	HepG2	liver
16	chr7:150939600-150941800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:150939600-150941800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr7:150939600-150942000	Weak transcription	Aorta	Aorta
19	chr7:150939800-150941200	Weak transcription	Ovary	ovary
20	chr7:150939800-150941400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:150939800-150941600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:150939800-150941600	Genic enhancers	Fetal Muscle Leg	muscle
23	chr7:150939800-150941600	Weak transcription	Osteobl	bone
24	chr7:150939800-150941800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr7:150940000-150941200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:150940000-150941200	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr7:150940000-150941200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:150940000-150941200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
29	chr7:150940000-150941400	Flanking Active TSS	Dnd41	blood
30	chr7:150940000-150941800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:150940000-150941800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:150940000-150942200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:150940000-150942200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr7:150940000-150942400	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr7:150940000-150942800	Enhancers	Spleen	Spleen
36	chr7:150940200-150941200	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr7:150940200-150941200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr7:150940200-150941400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:150940200-150941400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr7:150940200-150941400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:150940200-150941400	Genic enhancers	NHLF	lung
42	chr7:150940200-150941600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:150940200-150941600	Enhancers	Esophagus	oesophagus
44	chr7:150940200-150941800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:150940200-150941800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr7:150940200-150941800	Enhancers	Colon Smooth Muscle	Colon
47	chr7:150940200-150942000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
48	chr7:150940200-150942000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
49	chr7:150940200-150942000	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr7:150940200-150942200	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links