Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:30042265..30044438-chr6:30045994..30047534,2	MCF-7	breast:
2	chr6:30041813..30043406-chr6:30046381..30048644,2	MCF-7	breast:
3	chr6:30044585..30046967-chr6:30097709..30100269,2	MCF-7	breast:
4	chr6:30044892..30047064-chr6:30055499..30057098,2	MCF-7	breast:
5	chr6:30046314..30047956-chr6:30068316..30070912,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252901	Chromatin interaction
ENSG00000204618	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16896853	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16896944	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17839989	0.91[AMR][1000 genomes]
rs3888631	0.86[EUR][1000 genomes]
rs55945512	0.86[EUR][1000 genomes]
rs56344665	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57303436	0.86[EUR][1000 genomes]
rs58815089	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59812435	0.86[EUR][1000 genomes]
rs60940958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6915205	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941729	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73725925	0.86[EUR][1000 genomes]
rs73725936	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73725942	0.86[EUR][1000 genomes]
rs73725957	0.86[EUR][1000 genomes]
rs73725959	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73725962	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73725968	0.86[EUR][1000 genomes]
rs73727658	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031115	chr6:29934199-30058223	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv538172	chr6:29934199-30058223	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv884049	chr6:30037353-30047403	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30045600-30047000	Enhancers	Dnd41	blood
2	chr6:30046600-30047200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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