Variant report

Variant	rs7372883
Chromosome Location	chr3:48991255-48991256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:48979887..48982080-chr3:48989267..48992075,2	K562	blood:

Variant related genes	Relation type
ENSG00000177479	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11707968	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12715430	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13099075	0.81[EUR][1000 genomes]
rs3087866	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4974081	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4974083	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4974088	0.82[EUR][1000 genomes]
rs62259536	0.85[EUR][1000 genomes]
rs6414614	0.81[EUR][1000 genomes]
rs6446200	0.89[EUR][1000 genomes]
rs6446204	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6772452	0.85[EUR][1000 genomes]
rs6798112	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7100	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7373072	0.90[EUR][1000 genomes]
rs7434187	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7621226	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7653408	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9284885	0.82[EUR][1000 genomes]
rs9810318	0.80[EUR][1000 genomes]
rs9864243	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs7372883	P4HTM	cis	lung	GTEx
rs7372883	AMT	cis	lung	GTEx
rs7372883	AMT	cis	Thyroid	GTEx
rs7372883	ARIH2	cis	Thyroid	GTEx
rs7372883	ARIH2	Cis_1M	lymphoblastoid	RTeQTL
rs7372883	AMT	cis	Nerve Tibial	GTEx
rs7372883	NICN1-AS1	cis	Thyroid	GTEx
rs7372883	PH-4	Cis_1M	lymphoblastoid	RTeQTL
rs7372883	WDR6	cis	Muscle Skeletal	GTEx
rs7372883	NICN1	cis	Thyroid	GTEx
rs7372883	AMT	cis	Artery Tibial	GTEx
rs7372883	AMT	cis	Adipose Subcutaneous	GTEx
rs7372883	AMT	cis	Artery Aorta	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48957400-49003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:48962000-49000400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:48965200-49004200	Weak transcription	Colonic Mucosa	Colon
4	chr3:48965400-49000000	Weak transcription	Esophagus	oesophagus
5	chr3:48965800-48995400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:48965800-49000000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:48965800-49004000	Weak transcription	Fetal Brain Male	brain
8	chr3:48966000-49008000	Weak transcription	Fetal Kidney	kidney
9	chr3:48967400-48994800	Weak transcription	Gastric	stomach
10	chr3:48968000-48997200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:48968200-48997200	Weak transcription	NHDF-Ad	bronchial
12	chr3:48970400-49004400	Weak transcription	Pancreas	Pancrea
13	chr3:48970600-48991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:48970800-49002000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:48971000-48994800	Weak transcription	Spleen	Spleen
16	chr3:48971600-48993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:48972000-49000400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:48972400-48995400	Weak transcription	Brain Germinal Matrix	brain
19	chr3:48972400-48995400	Weak transcription	Ovary	ovary
20	chr3:48973400-48991400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:48973400-48994800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:48973600-48997600	Weak transcription	Osteobl	bone
23	chr3:48974800-48991400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr3:48975000-48999800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:48975200-48991800	Weak transcription	HUVEC	blood vessel
26	chr3:48979000-49007600	Weak transcription	Stomach Mucosa	stomach
27	chr3:48981400-49002200	Weak transcription	A549	lung
28	chr3:48981600-48992000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:48982200-48991800	Weak transcription	HSMM	muscle
30	chr3:48982800-48994800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:48982800-48995400	Weak transcription	Fetal Intestine Large	intestine
32	chr3:48982800-48999600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr3:48982800-49002800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr3:48983000-48991800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:48983000-48992400	Weak transcription	Hela-S3	cervix
36	chr3:48983200-48995000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:48983400-48995400	Weak transcription	Fetal Lung	lung
38	chr3:48983600-48991800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr3:48983600-48994000	Weak transcription	Fetal Brain Female	brain
40	chr3:48983800-48991800	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr3:48983800-48994400	Weak transcription	Primary B cells from cord blood	blood
42	chr3:48983800-48995400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr3:48984400-48991800	Weak transcription	HepG2	liver
44	chr3:48984400-48994600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:48984400-48995400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:48984600-48991800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:48984600-48998400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr3:48985000-48992000	Weak transcription	Primary T cells from cord blood	blood
49	chr3:48986600-49004400	Weak transcription	NHLF	lung
50	chr3:48987000-48991400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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