Variant report

Variant	rs73729668
Chromosome Location	chr6:35982149-35982150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55701612	0.92[ASN][1000 genomes]
rs57752519	0.92[ASN][1000 genomes]
rs58789267	1.00[AMR][1000 genomes]
rs60858339	0.92[ASN][1000 genomes]
rs73729643	0.92[ASN][1000 genomes]
rs73729645	0.92[ASN][1000 genomes]
rs73729659	1.00[AMR][1000 genomes]
rs7775452	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35964800-35991800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35980800-35982200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:35981400-35986400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:35982000-35982400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:35982000-35982800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:35982000-35983600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:35982000-35988200	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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