Variant report

Variant	rs73729926
Chromosome Location	chr7:138526020-138526021
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138516402..138518442-chr7:138524817..138526738,2	K562	blood:
2	chr7:138525822..138528348-chr7:138545426..138548328,2	K562	blood:
3	chr7:138523932..138526888-chr7:138547683..138549268,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1901247	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831154	chr7:138470488-138674113	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1027143	chr7:138480084-138992900	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv539136	chr7:138480084-138992900	Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138507200-138538200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:138514200-138527000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:138515800-138554000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:138516600-138537400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:138516600-138541400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:138517400-138554200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:138518200-138534600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:138518200-138565800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:138518400-138526600	Weak transcription	Osteobl	bone
10	chr7:138518400-138527400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:138518400-138528800	Weak transcription	Gastric	stomach
12	chr7:138518400-138545400	Weak transcription	Right Ventricle	heart
13	chr7:138519000-138527800	Strong transcription	HSMMtube	muscle
14	chr7:138519000-138548800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:138519200-138526600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:138519200-138529200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:138519200-138533000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:138519200-138533000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:138519200-138544000	Weak transcription	Placenta	Placenta
20	chr7:138519400-138544600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr7:138519600-138526800	Weak transcription	A549	lung
22	chr7:138519600-138542200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr7:138520200-138527200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:138520800-138552400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr7:138521000-138527400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:138521000-138571000	Weak transcription	Brain Anterior Caudate	brain
27	chr7:138521600-138534400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:138521800-138534600	Weak transcription	HSMM	muscle
29	chr7:138522000-138532400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:138522000-138534600	Weak transcription	Fetal Kidney	kidney
31	chr7:138522400-138526600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr7:138522400-138528800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr7:138522600-138528400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:138522600-138534600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr7:138522800-138534400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:138523000-138528600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr7:138523000-138530400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:138523000-138534600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr7:138523000-138539000	Weak transcription	Adipose Nuclei	Adipose
40	chr7:138523200-138526800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr7:138523200-138527000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr7:138523200-138528000	Weak transcription	Right Atrium	heart
43	chr7:138523200-138528600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr7:138523200-138528800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:138523200-138533400	Weak transcription	Ovary	ovary
46	chr7:138523200-138536000	Weak transcription	HUVEC	blood vessel
47	chr7:138523200-138541400	Weak transcription	Aorta	Aorta
48	chr7:138523200-138544200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:138523200-138544400	Weak transcription	Left Ventricle	heart
50	chr7:138523400-138526200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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