Variant report

Variant	rs73730786
Chromosome Location	chr6:37520906-37520907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37393552..37395813-chr6:37520408..37522475,2	K562	blood:
2	chr6:37519885..37521910-chr6:37523986..37525515,2	K562	blood:
3	chr6:37520797..37523091-chr6:37527184..37529081,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10947683	1.00[EUR][1000 genomes]
rs56102366	1.00[EUR][1000 genomes]
rs56830331	1.00[EUR][1000 genomes]
rs57466008	1.00[EUR][1000 genomes]
rs61282104	1.00[EUR][1000 genomes]
rs73730769	1.00[EUR][1000 genomes]
rs73730779	1.00[EUR][1000 genomes]
rs73730789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73734208	1.00[EUR][1000 genomes]
rs73734210	1.00[EUR][1000 genomes]
rs73734241	1.00[EUR][1000 genomes]
rs7755939	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv1006017	chr6:37516345-37530226	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37504400-37529200	Weak transcription	Right Atrium	heart
2	chr6:37510800-37533800	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:37514200-37521400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37514200-37522800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:37514400-37521400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:37515000-37521200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:37516000-37521000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:37516000-37521200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:37516000-37521200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:37516200-37521200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:37516200-37521200	Weak transcription	Fetal Kidney	kidney
12	chr6:37516200-37521400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:37516400-37527000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:37516600-37521200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:37516600-37521400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:37517400-37526200	Weak transcription	Thymus	Thymus
17	chr6:37517600-37521600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:37517800-37521000	Enhancers	Adipose Nuclei	Adipose
19	chr6:37517800-37523000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:37518000-37521200	Weak transcription	Primary B cells from cord blood	blood
21	chr6:37518800-37523800	Enhancers	Fetal Brain Male	brain
22	chr6:37519400-37522400	Enhancers	HUVEC	blood vessel
23	chr6:37519400-37522600	Enhancers	NHLF	lung
24	chr6:37519400-37523200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:37519400-37524800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:37519600-37521200	Enhancers	NH-A	brain
27	chr6:37519600-37521400	Enhancers	Fetal Brain Female	brain
28	chr6:37519600-37523400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:37519800-37523800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:37520000-37522000	Enhancers	Osteobl	bone
31	chr6:37520000-37522800	Weak transcription	Fetal Heart	heart
32	chr6:37520000-37523200	Enhancers	A549	lung
33	chr6:37520000-37523600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:37520200-37521000	Enhancers	Ovary	ovary
35	chr6:37520200-37521200	Weak transcription	Fetal Lung	lung
36	chr6:37520200-37522800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:37520200-37523600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:37520400-37521400	Weak transcription	Placenta	Placenta
39	chr6:37520400-37521400	Weak transcription	Fetal Thymus	thymus
40	chr6:37520400-37522800	Weak transcription	Brain Germinal Matrix	brain
41	chr6:37520600-37521000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:37520600-37521000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:37520800-37521000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr6:37520800-37521600	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr6:37520800-37521600	Flanking Active TSS	GM12878-XiMat	blood
46	chr6:37520800-37522000	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr6:37520800-37522200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:37520800-37522400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:37520800-37522600	Enhancers	NHEK	skin
50	chr6:37520800-37522800	Enhancers	HMEC	breast

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