Variant report

Variant	rs73735267
Chromosome Location	chr6:44918066-44918067
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44917939..44922059-chr6:44925666..44928514,3	K562	blood:
2	chr6:44917876..44920561-chr6:44920562..44922585,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55906653	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56028941	1.00[AMR][1000 genomes]
rs59248696	1.00[AMR][1000 genomes]
rs60008411	1.00[AMR][1000 genomes]
rs60219621	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60466482	1.00[AMR][1000 genomes]
rs6932249	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938262	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735204	0.88[AFR][1000 genomes]
rs73735210	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735258	1.00[AMR][1000 genomes]
rs73737901	1.00[AMR][1000 genomes]
rs7764903	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
11	nsv462938	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv470817	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv603007	chr6:44909515-45008779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44904400-44918800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:44913400-44930000	Weak transcription	Pancreas	Pancrea
3	chr6:44913600-44928600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:44913800-44918200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:44914000-44922800	Weak transcription	HSMM	muscle
6	chr6:44914400-44919200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:44914600-44923000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:44914800-44919200	Weak transcription	Aorta	Aorta
9	chr6:44915400-44932800	Weak transcription	Left Ventricle	heart
10	chr6:44916000-44923600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:44916600-44922600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:44917000-44919600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr6:44917200-44918400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr6:44917200-44918400	ZNF genes & repeats	Liver	Liver
15	chr6:44917200-44918400	ZNF genes & repeats	Dnd41	blood
16	chr6:44917200-44918400	ZNF genes & repeats	HepG2	liver
17	chr6:44917200-44919600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:44917200-44921800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:44917400-44918200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:44917400-44918400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:44917400-44918400	ZNF genes & repeats	Brain Angular Gyrus	brain
22	chr6:44917400-44919000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:44917600-44918200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
24	chr6:44917600-44918200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
25	chr6:44917600-44918200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
26	chr6:44917600-44918200	ZNF genes & repeats	Fetal Brain Female	brain
27	chr6:44917600-44918400	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr6:44917800-44918800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:44917800-44923400	Weak transcription	Colon Smooth Muscle	Colon
30	chr6:44917800-44924800	Weak transcription	Primary B cells from cord blood	blood
31	chr6:44918000-44918200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:44918000-44918800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:44918000-44918800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:44918000-44919600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr6:44918000-44920600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:44918000-44922400	Weak transcription	Fetal Lung	lung
37	chr6:44918000-44923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:44918000-44925000	Weak transcription	Fetal Heart	heart
39	chr6:44918000-44926600	Weak transcription	Esophagus	oesophagus
40	chr6:44918000-44928400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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