Variant report

Variant	rs73735352
Chromosome Location	chr6:45268630-45268631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56051040	0.93[AFR][1000 genomes]
rs56300352	0.86[AFR][1000 genomes]
rs58628168	0.85[AFR][1000 genomes]
rs59374313	0.84[AFR][1000 genomes]
rs59581679	0.85[AFR][1000 genomes]
rs73735310	1.00[AFR][1000 genomes]
rs73735313	1.00[AFR][1000 genomes]
rs73735316	1.00[AFR][1000 genomes]
rs73735320	0.93[AFR][1000 genomes]
rs73735324	1.00[AFR][1000 genomes]
rs73735328	1.00[AFR][1000 genomes]
rs73735335	1.00[AFR][1000 genomes]
rs73735353	1.00[AFR][1000 genomes]
rs73735376	0.85[AFR][1000 genomes]
rs73735390	0.85[AFR][1000 genomes]
rs73735392	0.85[AFR][1000 genomes]
rs73735394	0.85[AFR][1000 genomes]
rs73735395	0.85[AFR][1000 genomes]
rs73735401	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2763550	chr6:45186825-45275593	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45249800-45278200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:45260400-45273800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:45263800-45270400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:45268000-45274000	Weak transcription	Gastric	stomach
5	chr6:45268200-45269000	Enhancers	K562	blood
6	chr6:45268400-45269200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:45268600-45269000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:45268600-45269000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:45268600-45269000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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