Variant report

Variant	rs73735776
Chromosome Location	chr5:5266266-5266267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:5262944..5264749-chr5:5265584..5267240,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28526232	1.00[AMR][1000 genomes]
rs28809851	1.00[AMR][1000 genomes]
rs73735768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5244600-5266400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:5254400-5271200	Weak transcription	Fetal Kidney	kidney
3	chr5:5256400-5271600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:5258600-5271000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:5260200-5268000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:5262800-5269400	Strong transcription	Ovary	ovary
7	chr5:5263000-5271000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:5263400-5271000	Weak transcription	Pancreas	Pancrea
9	chr5:5263800-5279000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:5264400-5266600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:5265000-5267000	Strong transcription	NH-A	brain
12	chr5:5265200-5266800	Enhancers	Fetal Muscle Leg	muscle
13	chr5:5265200-5282600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:5265600-5268200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:5265600-5268800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr5:5265800-5266800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:5265800-5267600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:5266000-5266400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:5266000-5266800	Enhancers	Fetal Stomach	stomach
20	chr5:5266200-5266600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:5266200-5266800	Enhancers	H9 Cell Line	embryonic stem cell
22	chr5:5266200-5267000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:5266200-5267000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr5:5266200-5267200	Enhancers	HUES48 Cell Line	embryonic stem cell

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