Variant report
| Variant | rs73736280 |
|---|---|
| Chromosome Location | chr7:145588123-145588124 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs56798422 | 1.00[AFR][1000 genomes] |
| rs57150050 | 1.00[AFR][1000 genomes] |
| rs57451201 | 1.00[AFR][1000 genomes] |
| rs57506563 | 1.00[AFR][1000 genomes] |
| rs59302450 | 1.00[AFR][1000 genomes] |
| rs60274688 | 1.00[AFR][1000 genomes] |
| rs61526483 | 1.00[AFR][1000 genomes] |
| rs73736279 | 1.00[AFR][1000 genomes] |
| rs73736292 | 1.00[AFR][1000 genomes] |
| rs73736293 | 1.00[AFR][1000 genomes] |
| rs73736294 | 1.00[AFR][1000 genomes] |
| rs73736296 | 1.00[AFR][1000 genomes] |
| rs73738416 | 1.00[AFR][1000 genomes] |
| rs73738417 | 1.00[AFR][1000 genomes] |
| rs73738427 | 1.00[AFR][1000 genomes] |
| rs73738434 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754040 | chr7:145303352-145698352 | Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2755386 | chr7:145303352-145698352 | Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1019118 | chr7:145483353-145639795 | Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv889384 | chr7:145541783-146239545 | Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:145584000-145590400 | Weak transcription | K562 | blood |
