Variant report

Variant	rs7373651
Chromosome Location	chr3:134264218-134264219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134257572..134260257-chr3:134262534..134264686,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10804633	1.00[AFR][1000 genomes]
rs10935122	1.00[AFR][1000 genomes]
rs12632372	1.00[AFR][1000 genomes]
rs4396934	1.00[AFR][1000 genomes]
rs4596189	1.00[AFR][1000 genomes]
rs4955535	0.86[AFR][1000 genomes]
rs6439486	1.00[AFR][1000 genomes]
rs6439490	1.00[AFR][1000 genomes]
rs6806608	1.00[AFR][1000 genomes]
rs9844020	1.00[AFR][1000 genomes]
rs9870217	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134236200-134267000	Weak transcription	HSMM	muscle
2	chr3:134244800-134269600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:134246200-134280800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:134246400-134265400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:134246600-134269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:134246600-134281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:134249400-134265200	Weak transcription	Osteobl	bone
8	chr3:134249600-134268600	Weak transcription	Fetal Kidney	kidney
9	chr3:134249800-134265200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:134250400-134269400	Weak transcription	Psoas Muscle	Psoas
11	chr3:134250400-134269600	Weak transcription	HMEC	breast
12	chr3:134250400-134282000	Weak transcription	Stomach Mucosa	stomach
13	chr3:134250800-134265200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:134251000-134268400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:134252000-134265000	Weak transcription	HSMMtube	muscle
16	chr3:134252200-134265600	Weak transcription	Brain Angular Gyrus	brain
17	chr3:134252600-134266600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:134253200-134280000	Weak transcription	NH-A	brain
19	chr3:134254600-134265600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:134254600-134266600	Weak transcription	NHLF	lung
21	chr3:134256400-134267400	Weak transcription	K562	blood
22	chr3:134256600-134264600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:134256600-134265200	Weak transcription	Fetal Brain Male	brain
24	chr3:134256600-134265200	Weak transcription	Ovary	ovary
25	chr3:134256600-134266800	Weak transcription	NHDF-Ad	bronchial
26	chr3:134256600-134269000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:134256600-134269200	Weak transcription	Colonic Mucosa	Colon
28	chr3:134256600-134287200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:134256800-134264600	Weak transcription	GM12878-XiMat	blood
30	chr3:134256800-134265000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr3:134256800-134265000	Weak transcription	Fetal Lung	lung
32	chr3:134256800-134265200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:134256800-134265200	Weak transcription	Gastric	stomach
34	chr3:134256800-134265200	Weak transcription	Lung	lung
35	chr3:134256800-134265200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr3:134256800-134265400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr3:134256800-134265400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr3:134256800-134265400	Weak transcription	Fetal Brain Female	brain
39	chr3:134256800-134265400	Weak transcription	NHEK	skin
40	chr3:134256800-134266600	Weak transcription	Small Intestine	intestine
41	chr3:134256800-134266800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:134256800-134268400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:134256800-134269000	Weak transcription	Spleen	Spleen
44	chr3:134256800-134269000	Weak transcription	HepG2	liver
45	chr3:134256800-134269200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:134256800-134269200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr3:134256800-134269200	Weak transcription	Aorta	Aorta
48	chr3:134256800-134269200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr3:134256800-134269400	Weak transcription	Brain Germinal Matrix	brain
50	chr3:134256800-134271000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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