Variant report

Variant	rs73736638
Chromosome Location	chr7:140303494-140303495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:140303471-140303677	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:140303471-140303521	GM12891	blood:	n/a
2	chr7:140303471-140303521	HIPEpiC	eye:	n/a
3	chr7:140303471-140303521	PrEC	prostate:	n/a
4	chr7:140303471-140303521	HL-60	blood:	n/a
5	chr7:140303471-140303521	PFSK-1	brain:	n/a
6	chr7:140303471-140303521	LNCaP	prostate:	n/a
7	chr7:140303471-140303521	GM06990	blood:	n/a
8	chr7:140303471-140303521	HCF	heart:	n/a
9	chr7:140303471-140303521	IMR90	lung:	fetal
10	chr7:140303471-140303521	T-47D	breast:	n/a
11	chr7:140303471-140303521	NH-A	brain:	n/a
12	chr7:140303471-140303521	H1-hESC	embryonic stem cell:	embryo
13	chr7:140303471-140303521	BE2_C	brain:	n/a
14	chr7:140303471-140303521	Jurkat	blood:	n/a
15	chr7:140303471-140303521	HUVEC	blood vessel:	n/a
16	chr7:140303471-140303521	RPTEC	kidney:	n/a
17	chr7:140303471-140303521	SAEC	small airway:	n/a
18	chr7:140303471-140303521	GM19239	blood:	n/a
19	chr7:140303471-140303521	NT2-D1	testis:	n/a
20	chr7:140303471-140303521	AoSMC	blood vessel:	n/a
21	chr7:140303471-140303521	ECC-1	luminal epithelium:	n/a
22	chr7:140303471-140303521	Caco-2	colon:	n/a
23	chr7:140303471-140303521	MCF10A-Er-Src	breast:	n/a
24	chr7:140303471-140303521	HRPEpiC	eye:	n/a
25	chr7:140303471-140303521	AG04449	skin:	fetal
26	chr7:140303471-140303521	SK-N-SH_RA	brain:	n/a
27	chr7:140303471-140303521	ProgFib	skin:	n/a
28	chr7:140303471-140303521	AG04450	lung:	fetal
29	chr7:140303471-140303521	HEEpiC	esophagus:	n/a
30	chr7:140303471-140303521	HNPCEpiC	eye:	n/a
31	chr7:140303471-140303521	HPAEpiC	pulmonary alveolar:	n/a
32	chr7:140303471-140303521	A549	lung:	n/a
33	chr7:140303471-140303521	AG09319	gingival:	n/a
34	chr7:140303471-140303521	SK-N-MC	brain:	n/a
35	chr7:140303471-140303521	HMEC	breast:	n/a
36	chr7:140303471-140303521	GM12878	blood:	n/a
37	chr7:140303471-140303521	CMK	blood:	n/a
38	chr7:140303471-140303521	PANC-1	pancreas:	n/a
39	chr7:140303471-140303521	HCM	heart:	n/a
40	chr7:140303471-140303521	AG09309	skin:	n/a
41	chr7:140303471-140303521	Hepatocyte	liver:	n/a
42	chr7:140303471-140303521	Hela-S3	cervix:	n/a
43	chr7:140303471-140303521	HCPEpiC	choroid plexus:	n/a
44	chr7:140303471-140303521	BJ	skin:	n/a
45	chr7:140303471-140303521	HepG2	liver:	n/a
46	chr7:140303471-140303521	NHDF-neo	bronchial:	n/a
47	chr7:140303471-140303521	GM12892	blood:	n/a
48	chr7:140303471-140303521	HRCEpiC	kidney:	n/a
49	chr7:140303471-140303521	MCF-7	breast:	n/a
50	chr7:140303471-140303521	HCT-116	colon:	n/a

No data

Variant related genes	Relation type
DENND2A	TF binding region
DENND2A	CpG island

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10242147	0.92[AFR][1000 genomes]
rs10270711	0.96[AFR][1000 genomes]
rs10273827	1.00[AFR][1000 genomes]
rs73736639	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1021133	chr7:140270797-140338653	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029128	chr7:140293389-140335570	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140263800-140303600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:140263800-140303600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:140263800-140305200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:140263800-140305600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:140265200-140304400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:140267800-140326000	Weak transcription	Gastric	stomach
7	chr7:140269400-140306600	Weak transcription	Right Atrium	heart
8	chr7:140281600-140306400	Weak transcription	Brain Angular Gyrus	brain
9	chr7:140281800-140304200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:140285800-140306400	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:140286000-140304000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:140287600-140304800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:140287600-140305600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr7:140287600-140326000	Weak transcription	Fetal Brain Male	brain
15	chr7:140296000-140326000	Weak transcription	Fetal Heart	heart
16	chr7:140297600-140313600	Weak transcription	Fetal Kidney	kidney
17	chr7:140297800-140304200	Weak transcription	NH-A	brain
18	chr7:140297800-140306800	Weak transcription	Spleen	Spleen
19	chr7:140298800-140305000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:140299200-140306800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr7:140300400-140305400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:140301800-140305400	Weak transcription	Right Ventricle	heart
23	chr7:140302000-140303800	Weak transcription	NHDF-Ad	bronchial
24	chr7:140302200-140304000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:140302200-140304000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:140302200-140304000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr7:140302200-140304000	Strong transcription	Fetal Muscle Leg	muscle
28	chr7:140302200-140304200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:140302200-140304400	Weak transcription	Fetal Intestine Small	intestine
30	chr7:140302200-140304800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:140302200-140305000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:140302200-140305200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:140302200-140306200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:140302200-140306200	Weak transcription	Brain Hippocampus Middle	brain
35	chr7:140302200-140306400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:140302200-140306400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:140302200-140307000	Weak transcription	Brain Germinal Matrix	brain
38	chr7:140302200-140326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:140302400-140303600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr7:140302400-140303800	Weak transcription	Fetal Stomach	stomach
41	chr7:140302400-140303800	Weak transcription	Ovary	ovary
42	chr7:140302400-140304200	Weak transcription	Fetal Lung	lung
43	chr7:140302400-140304400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:140302400-140304800	Weak transcription	Adipose Nuclei	Adipose
45	chr7:140302400-140305000	Weak transcription	Left Ventricle	heart
46	chr7:140302400-140305000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr7:140302400-140305400	Weak transcription	Fetal Intestine Large	intestine
48	chr7:140302400-140306200	Weak transcription	Brain Substantia Nigra	brain
49	chr7:140302400-140306200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr7:140302400-140306400	Weak transcription	Brain Anterior Caudate	brain

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