Variant report

Variant	rs73737423
Chromosome Location	chr6:45429337-45429338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45427141..45429573-chr6:45438287..45440085,2	K562	blood:
2	chr6:45426065..45427907-chr6:45429310..45431026,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55701611	1.00[AMR][1000 genomes]
rs55951053	1.00[AMR][1000 genomes]
rs59029804	1.00[AMR][1000 genomes]
rs60512318	1.00[AMR][1000 genomes]
rs6927456	1.00[AMR][1000 genomes]
rs6930090	1.00[AMR][1000 genomes]
rs6935969	1.00[AMR][1000 genomes]
rs73735342	1.00[AMR][1000 genomes]
rs73735343	1.00[AMR][1000 genomes]
rs73735361	1.00[AMR][1000 genomes]
rs73735389	1.00[AMR][1000 genomes]
rs73735398	1.00[AMR][1000 genomes]
rs73735412	1.00[AMR][1000 genomes]
rs73737442	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73737464	1.00[AMR][1000 genomes]
rs7771402	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45407200-45462000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:45414000-45431400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:45416400-45430600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:45416400-45440400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:45416600-45430000	Weak transcription	Small Intestine	intestine
6	chr6:45419200-45456200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:45422000-45441200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:45422000-45445000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:45422200-45440000	Weak transcription	Brain Angular Gyrus	brain
10	chr6:45422400-45438200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:45422600-45432400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:45422600-45437200	Weak transcription	NHDF-Ad	bronchial
13	chr6:45422600-45439800	Weak transcription	NHLF	lung
14	chr6:45423000-45454400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:45423400-45434600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:45425600-45444000	Weak transcription	Fetal Thymus	thymus
17	chr6:45426600-45430800	Strong transcription	Dnd41	blood
18	chr6:45426800-45444200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:45427600-45430000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:45427800-45429600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr6:45428400-45430000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:45428600-45430600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:45428600-45431600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:45428800-45429400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:45428800-45429400	Genic enhancers	HSMM	muscle
26	chr6:45428800-45429600	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:45428800-45429600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr6:45428800-45430000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr6:45428800-45430200	Enhancers	Primary T cells from cord blood	blood
30	chr6:45428800-45430200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:45428800-45430800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:45429000-45429400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:45429000-45429400	Genic enhancers	NH-A	brain
34	chr6:45429000-45429600	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr6:45429000-45429600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr6:45429000-45429800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:45429000-45429800	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr6:45429000-45430000	Genic enhancers	Muscle Satellite Cultured Cells	--
39	chr6:45429000-45430800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:45429000-45430800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:45429000-45430800	Genic enhancers	Osteobl	bone
42	chr6:45429000-45440600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:45429200-45429400	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr6:45429200-45429600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr6:45429200-45429600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:45429200-45429600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:45429200-45429600	Genic enhancers	HSMMtube	muscle
48	chr6:45429200-45429600	Enhancers	NHEK	skin
49	chr6:45429200-45429800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:45429200-45429800	Enhancers	K562	blood

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