Variant report

Variant	rs73738094
Chromosome Location	chr5:8234979-8234980
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58725933	0.86[AFR][1000 genomes]
rs60267025	1.00[AMR][1000 genomes]
rs61366741	0.86[AFR][1000 genomes]
rs73738051	0.86[AFR][1000 genomes]
rs73738054	0.86[AFR][1000 genomes]
rs73738055	0.86[AFR][1000 genomes]
rs73738063	0.86[AFR][1000 genomes]
rs73738080	1.00[AMR][1000 genomes]
rs73738096	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024542	chr5:8138412-8299908	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3470342	chr5:8234221-8235461	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3470343	chr5:8234221-8235461	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8234200-8235000	Enhancers	Fetal Intestine Small	intestine
2	chr5:8234800-8235200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr5:8234800-8235400	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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