Variant report

Variant	rs73738335
Chromosome Location	chr6:45984276-45984277
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2179994	0.95[ASN][1000 genomes]
rs9349341	0.95[ASN][1000 genomes]
rs9369594	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395145	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463172	0.85[ASN][1000 genomes]
rs9472663	0.90[ASN][1000 genomes]
rs9472675	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45981800-45984600	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr6:45982400-45984400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:45982800-45984400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr6:45982800-45984600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:45983200-45984600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
6	chr6:45983600-45984400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:45983800-45984400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:45983800-45984400	Bivalent/Poised TSS	Fetal Kidney	kidney
9	chr6:45983800-45984400	Bivalent Enhancer	Small Intestine	intestine
10	chr6:45983800-45984400	Bivalent Enhancer	Stomach Mucosa	stomach
11	chr6:45983800-45984600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:45983800-45984600	Bivalent Enhancer	Fetal Intestine Small	intestine
13	chr6:45983800-45984600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:45984000-45984400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr6:45984000-45984400	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
16	chr6:45984000-45984400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr6:45984000-45984400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
18	chr6:45984000-45984400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:45984000-45984400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
20	chr6:45984000-45984600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr6:45984200-45984400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:45984200-45984400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:45984200-45984400	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr6:45984200-45984400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:45984200-45984400	Bivalent Enhancer	Colonic Mucosa	Colon
26	chr6:45984200-45984400	Bivalent Enhancer	Placenta	Placenta
27	chr6:45984200-45984400	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr6:45984200-45984400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr6:45984200-45984600	Enhancers	Duodenum Mucosa	Duodenum
30	chr6:45984200-45984600	Bivalent Enhancer	Fetal Intestine Large	intestine
31	chr6:45984200-45984600	Flanking Active TSS	Hela-S3	cervix
32	chr6:45984200-45984800	ZNF genes & repeats	Primary B cells from cord blood	blood
33	chr6:45984200-45985400	Weak transcription	Psoas Muscle	Psoas
34	chr6:45984200-45985400	Weak transcription	Right Ventricle	heart
35	chr6:45984200-45985600	Weak transcription	Fetal Heart	heart
36	chr6:45984200-45991200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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