Variant report

Variant	rs73738525
Chromosome Location	chr6:45589163-45589164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45585562..45587512-chr6:45588104..45589715,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10080253	0.80[AFR][1000 genomes]
rs12525863	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12526713	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12526748	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12661055	0.84[AFR][1000 genomes]
rs12663992	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1491141	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16873553	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56935686	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58129892	0.85[AFR][1000 genomes]
rs60884282	0.84[AFR][1000 genomes]
rs6458453	0.84[AFR][1000 genomes]
rs6902401	0.86[AFR][1000 genomes]
rs6914126	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6916895	0.86[AFR][1000 genomes]
rs6917651	0.86[AFR][1000 genomes]
rs6927048	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6930188	0.88[AFR][1000 genomes]
rs6934210	0.85[AFR][1000 genomes]
rs6936365	0.88[AFR][1000 genomes]
rs6940187	0.86[AFR][1000 genomes]
rs6941683	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6941890	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6941971	0.86[AFR][1000 genomes]
rs73738526	0.86[AFR][1000 genomes]
rs73738527	0.85[AFR][1000 genomes]
rs73738528	0.83[AFR][1000 genomes]
rs7746733	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7752782	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7763886	0.86[AFR][1000 genomes]
rs7765045	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs913804	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9463109	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472517	0.85[ASN][1000 genomes]
rs9472526	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9472527	0.86[AFR][1000 genomes]
rs9472529	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9472532	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45587200-45589200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr6:45587400-45589200	Enhancers	Dnd41	blood
3	chr6:45587600-45589200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:45587800-45589200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:45587800-45589400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:45588200-45592800	Weak transcription	NHEK	skin
7	chr6:45588200-45593000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:45588400-45592200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:45588400-45592600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:45588400-45592600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:45588400-45592600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:45588400-45592600	Weak transcription	NH-A	brain
13	chr6:45588400-45592800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:45588400-45592800	Weak transcription	Hela-S3	cervix
15	chr6:45588400-45593000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:45588400-45593000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:45588400-45593600	Weak transcription	Fetal Lung	lung
18	chr6:45588400-45597800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:45588600-45592200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:45588600-45592200	Weak transcription	Osteobl	bone
21	chr6:45588600-45592400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:45588600-45592400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:45588600-45592400	Weak transcription	NHLF	lung
24	chr6:45588600-45592600	Weak transcription	HMEC	breast
25	chr6:45588600-45592600	Weak transcription	NHDF-Ad	bronchial
26	chr6:45588600-45601000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:45588800-45589200	Weak transcription	HSMMtube	muscle
28	chr6:45589000-45592400	Weak transcription	HSMM	muscle

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