Variant report

Variant	rs73740855
Chromosome Location	chr6:27831565-27831566
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:27831541-27835704	PBDE	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27100613..27102138-chr6:27831418..27834082,2	K562	blood:
2	chr6:27098113..27100606-chr6:27830587..27832158,2	K562	blood:
3	chr6:26171577..26173697-chr6:27830155..27831800,2	MCF-7	breast:
4	chr6:26215814..26218576-chr6:27831262..27835058,4	K562	blood:
5	chr6:27829699..27832078-chr8:101028376..101031173,2	MCF-7	breast:
6	chr17:56707936..56710461-chr6:27831380..27834313,2	MCF-7	breast:
7	chr6:27831507..27834483-chr6:28890233..28891763,2	MCF-7	breast:
8	chr6:27113113..27117592-chr6:27831181..27837403,7	MCF-7	breast:

No data

Variant related genes	Relation type
HIST1H2AL	TF binding region
ENSG00000196787	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000204713	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55711161	1.00[AMR][1000 genomes]
rs59103616	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740841	1.00[AMR][1000 genomes]
rs73740859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
3	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
4	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
5	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27808000-27831800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:27822800-27831800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:27824000-27831800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:27829000-27831800	Weak transcription	Right Atrium	heart
5	chr6:27830000-27831800	Weak transcription	Dnd41	blood
6	chr6:27830200-27831600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:27830200-27831600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:27830200-27831800	Weak transcription	Primary B cells from cord blood	blood
9	chr6:27830400-27832200	Flanking Active TSS	GM12878-XiMat	blood
10	chr6:27830600-27831800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:27830600-27831800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:27830800-27831800	Weak transcription	NH-A	brain
13	chr6:27830800-27831800	Weak transcription	NHEK	skin
14	chr6:27830800-27832200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:27830800-27835800	Active TSS	K562	blood
16	chr6:27831000-27831800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:27831000-27831800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:27831200-27831800	Active TSS	Fetal Thymus	thymus
19	chr6:27831200-27832800	Weak transcription	HepG2	liver
20	chr6:27831200-27835800	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr6:27831200-27835800	Active TSS	H9 Cell Line	embryonic stem cell
22	chr6:27831400-27831600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:27831400-27831600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:27831400-27831600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:27831400-27831800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:27831400-27831800	Active TSS	Thymus	Thymus
27	chr6:27831400-27833000	Weak transcription	Hela-S3	cervix
28	chr6:27831400-27833800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
29	chr6:27831400-27834400	Active TSS	NHDF-Ad	bronchial
30	chr6:27831400-27835600	Active TSS	HUES6 Cell Line	embryonic stem cell

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