Variant report
| Variant | rs73741708 |
|---|---|
| Chromosome Location | chr6:27385564-27385565 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000238648 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs16899633 | 0.92[AFR][1000 genomes] |
| rs16899664 | 1.00[AFR][1000 genomes] |
| rs16899742 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16899778 | 0.96[AFR][1000 genomes] |
| rs16899794 | 0.92[AFR][1000 genomes] |
| rs16899861 | 0.94[AFR][1000 genomes] |
| rs56141585 | 1.00[AFR][1000 genomes] |
| rs56773753 | 0.92[AFR][1000 genomes] |
| rs56980568 | 0.88[AFR][1000 genomes] |
| rs56982870 | 1.00[AFR][1000 genomes] |
| rs57123722 | 0.88[AFR][1000 genomes] |
| rs57509377 | 1.00[AFR][1000 genomes] |
| rs58016420 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58669069 | 0.92[AFR][1000 genomes] |
| rs58685987 | 0.92[AFR][1000 genomes] |
| rs58942357 | 0.92[AFR][1000 genomes] |
| rs59659183 | 1.00[AFR][1000 genomes] |
| rs61206558 | 1.00[AFR][1000 genomes] |
| rs61482673 | 1.00[AFR][1000 genomes] |
| rs61483696 | 1.00[AFR][1000 genomes] |
| rs73738795 | 0.92[AFR][1000 genomes] |
| rs73738796 | 0.88[AFR][1000 genomes] |
| rs73738798 | 0.92[AFR][1000 genomes] |
| rs73738799 | 0.92[AFR][1000 genomes] |
| rs73738802 | 1.00[AFR][1000 genomes] |
| rs73741704 | 1.00[AFR][1000 genomes] |
| rs73741706 | 0.96[AFR][1000 genomes] |
| rs766093 | 0.92[AFR][1000 genomes] |
| rs7744655 | 0.96[AFR][1000 genomes] |
| rs7750919 | 0.92[AFR][1000 genomes] |
| rs7751102 | 1.00[AFR][1000 genomes] |
| rs7765353 | 1.00[AFR][1000 genomes] |
| rs7768826 | 0.92[AFR][1000 genomes] |
| rs7773166 | 0.92[AFR][1000 genomes] |
| rs7775305 | 0.88[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031803 | chr6:27355881-27423655 | Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv538166 | chr6:27355881-27423655 | Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 4 | nsv5235 | chr6:27358498-27404074 | ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
