Variant report

Variant	rs73743008
Chromosome Location	chr6:54855575-54855576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4524609	1.00[AMR][1000 genomes]
rs56687431	1.00[AMR][1000 genomes]
rs57938082	1.00[AMR][1000 genomes]
rs73742866	1.00[AMR][1000 genomes]
rs73742868	1.00[AMR][1000 genomes]
rs73743017	1.00[AMR][1000 genomes]
rs73743018	1.00[AMR][1000 genomes]
rs73743020	1.00[AMR][1000 genomes]
rs73743028	1.00[AMR][1000 genomes]
rs73743051	1.00[AMR][1000 genomes]
rs73743229	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5309	chr6:54834971-54855729	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54847000-54856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54853000-54857000	Weak transcription	HMEC	breast
3	chr6:54853400-54858400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:54854000-54856400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:54855400-54855800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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