Variant report

Variant	rs73744859
Chromosome Location	chr6:34208190-34208191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34206853..34209166-chr6:34358536..34360960,2	MCF-7	breast:
2	chr6:34068167..34071108-chr6:34207523..34209656,2	K562	blood:
3	chr6:34207092..34209541-chr6:34759893..34762496,2	K562	blood:
4	chr6:34191465..34193341-chr6:34208084..34210074,2	MCF-7	breast:
5	chr6:33280312..33282313-chr6:34207079..34209267,2	K562	blood:
6	chr6:34112613..34114154-chr6:34208164..34210617,2	K562	blood:
7	chr6:34207322..34209425-chr6:34465568..34467978,2	K562	blood:
8	chr6:34203866..34208750-chr6:34388488..34394053,10	MCF-7	breast:
9	chr6:34208090..34210823-chr6:34391243..34393552,2	K562	blood:
10	chr6:34202383..34217863-chr6:34357259..34364960,37	K562	blood:
11	chr6:34202852..34208935-chr6:34358420..34361531,11	K562	blood:
12	chr6:34156179..34158888-chr6:34205822..34208269,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124493	Chromatin interaction
ENSG00000124614	Chromatin interaction
ENSG00000231925	Chromatin interaction
ENSG00000272325	Chromatin interaction
ENSG00000271231	Chromatin interaction
ENSG00000065060	Chromatin interaction
ENSG00000270800	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10214450	0.92[EUR][1000 genomes]
rs41269026	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41269028	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55692303	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56410019	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv885782	chr6:34187206-34209516	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv885783	chr6:34187206-34209844	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv885784	chr6:34187206-34246714	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
8	nsv602865	chr6:34203406-34217181	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
9	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
10	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
11	esv1840881	chr6:34204285-34231570	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
12	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
13	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34205400-34216600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:34206000-34208200	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
3	chr6:34206000-34208200	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
4	chr6:34206000-34208200	Transcr. at gene 5' and 3'	Dnd41	blood
5	chr6:34206000-34208400	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
6	chr6:34206000-34212000	Weak transcription	Ovary	ovary
7	chr6:34206200-34208200	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
8	chr6:34206200-34208200	Transcr. at gene 5' and 3'	NHEK	skin
9	chr6:34206200-34208400	Transcr. at gene 5' and 3'	K562	blood
10	chr6:34206200-34208400	Flanking Active TSS	NH-A	brain
11	chr6:34206200-34208600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
12	chr6:34206200-34209400	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
13	chr6:34206200-34212600	Weak transcription	Aorta	Aorta
14	chr6:34206400-34208200	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
15	chr6:34206400-34208400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:34206400-34208600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
17	chr6:34206400-34208800	Weak transcription	Liver	Liver
18	chr6:34206400-34210000	Weak transcription	HSMMtube	muscle
19	chr6:34206400-34210600	Weak transcription	Right Atrium	heart
20	chr6:34206400-34211600	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:34206400-34211600	Weak transcription	Left Ventricle	heart
22	chr6:34206400-34215800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:34206400-34216000	Weak transcription	Fetal Kidney	kidney
24	chr6:34206400-34216000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:34206600-34208200	Weak transcription	Spleen	Spleen
26	chr6:34206600-34208400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:34206600-34208600	Weak transcription	Brain Germinal Matrix	brain
28	chr6:34206600-34208600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:34206600-34208600	Weak transcription	Brain Substantia Nigra	brain
30	chr6:34206600-34208600	Weak transcription	Pancreas	Pancrea
31	chr6:34206600-34208800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:34206600-34208800	Weak transcription	Brain Angular Gyrus	brain
33	chr6:34206600-34208800	Enhancers	Fetal Intestine Large	intestine
34	chr6:34206600-34208800	Genic enhancers	Fetal Intestine Small	intestine
35	chr6:34206600-34208800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:34206600-34208800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:34206600-34209000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:34206600-34209200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:34206600-34209200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:34206600-34209200	Weak transcription	Colonic Mucosa	Colon
41	chr6:34206600-34209400	Weak transcription	Right Ventricle	heart
42	chr6:34206800-34208200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:34206800-34208200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr6:34206800-34208200	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr6:34206800-34208200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr6:34206800-34208200	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:34206800-34208400	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
48	chr6:34206800-34208400	Weak transcription	Esophagus	oesophagus
49	chr6:34206800-34208600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:34206800-34208600	Weak transcription	Brain Anterior Caudate	brain

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