Variant report

Variant	rs73745995
Chromosome Location	chr6:70015255-70015256
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10485253	0.91[AFR][1000 genomes]
rs12529585	0.82[AFR][1000 genomes]
rs16900653	0.82[AFR][1000 genomes]
rs55638103	1.00[AFR][1000 genomes]
rs6937300	0.84[AFR][1000 genomes]
rs73745998	0.84[AFR][1000 genomes]
rs73746002	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886139	chr6:69979989-70041922	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv515657	chr6:70007450-70027419	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv527172	chr6:70007450-70029980	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv603634	chr6:70007450-70060225	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv463149	chr6:70007450-70097588	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv603635	chr6:70007450-70097588	Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3472775	chr6:70013973-70018502	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3472773	chr6:70014019-70018479	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3472772	chr6:70014047-70018441	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv17912	chr6:70014088-70018507	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3472776	chr6:70014116-70018395	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv970365	chr6:70014130-70017643	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69994400-70015400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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