Variant report

Variant	rs73747320
Chromosome Location	chr6:33786615-33786616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33778466..33781199-chr6:33784489..33787096,2	MCF-7	breast:
2	chr6:33779507..33781468-chr6:33784966..33787007,2	K562	blood:
3	chr6:33785785..33787790-chr6:33794712..33797065,2	K562	blood:
4	chr6:33777719..33780033-chr6:33785605..33787347,2	MCF-7	breast:
5	chr6:33784923..33786692-chr6:33819953..33822581,2	K562	blood:
6	chr6:33760837..33764079-chr6:33785814..33788727,4	MCF-7	breast:
7	chr6:33755474..33757041-chr6:33786349..33788983,2	MCF-7	breast:
8	chr6:33774712..33778330-chr6:33783087..33786924,3	K562	blood:
9	chr6:33776830..33783261-chr6:33784291..33788356,6	K562	blood:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73744674	1.00[AMR][1000 genomes]
rs73747318	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747324	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747326	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73747332	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73747340	0.90[EUR][1000 genomes]
rs767893	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs767894	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33776400-33792400	Weak transcription	Right Atrium	heart
2	chr6:33781800-33792400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:33782200-33790600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:33782800-33790600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33783800-33787000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:33783800-33788200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:33785400-33788800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:33785400-33790200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:33786600-33786800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:33786600-33787200	Bivalent Enhancer	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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