Variant report

Variant	rs73747338
Chromosome Location	chr6:33798041-33798042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56139489	0.83[EUR][1000 genomes]
rs6928758	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747327	0.83[EUR][1000 genomes]
rs73747329	0.83[EUR][1000 genomes]
rs73747330	0.83[EUR][1000 genomes]
rs73747331	0.83[EUR][1000 genomes]
rs73747334	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73747336	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv885775	chr6:33788055-33828178	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032074	chr6:33795671-33835988	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022403	chr6:33795671-33847345	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33793000-33798800	Weak transcription	Spleen	Spleen
2	chr6:33794600-33799400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:33795000-33799600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:33795800-33798600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:33796000-33798200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:33796800-33798400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:33796800-33798800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:33797000-33798200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:33797000-33798800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:33797200-33798200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:33797200-33798800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:33797200-33801800	Weak transcription	A549	lung
13	chr6:33797200-33805600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:33798000-33798200	Enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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