Variant report

Variant	rs73747825
Chromosome Location	chr6:56313082-56313083
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56308676..56311120-chr6:56312464..56314114,2	MCF-7	breast:
2	chr6:56305616..56308132-chr6:56311129..56313082,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16887921	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887924	1.00[AMR][1000 genomes]
rs2397224	0.83[AFR][1000 genomes]
rs6922693	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745844	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745845	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56304200-56314800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:56305600-56315800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:56305600-56318600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:56305600-56319600	Weak transcription	HMEC	breast
5	chr6:56306600-56319000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:56308800-56373800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:56309000-56321000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:56309400-56322600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:56309800-56315000	Weak transcription	HSMM	muscle
10	chr6:56310000-56315000	Weak transcription	Aorta	Aorta
11	chr6:56310200-56313400	Weak transcription	Fetal Heart	heart
12	chr6:56310200-56313400	Weak transcription	Right Atrium	heart
13	chr6:56310400-56315400	Weak transcription	NH-A	brain
14	chr6:56310400-56321000	Weak transcription	Left Ventricle	heart
15	chr6:56310800-56314600	Weak transcription	HepG2	liver
16	chr6:56311000-56315600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:56311000-56315800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:56311000-56315800	Weak transcription	Psoas Muscle	Psoas
19	chr6:56311000-56316200	Weak transcription	Osteobl	bone
20	chr6:56311400-56315000	Weak transcription	NHDF-Ad	bronchial
21	chr6:56311400-56315400	Weak transcription	Right Ventricle	heart
22	chr6:56311600-56313400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:56311600-56315200	Weak transcription	HSMMtube	muscle
24	chr6:56311600-56315400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:56311600-56315400	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:56311600-56316000	Weak transcription	Fetal Stomach	stomach
27	chr6:56311600-56321000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:56311800-56315200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:56312800-56314400	Enhancers	Fetal Lung	lung
30	chr6:56313000-56313200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:56313000-56313200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:56313000-56314000	Enhancers	Colon Smooth Muscle	Colon
33	chr6:56313000-56314000	Enhancers	Ovary	ovary

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