Variant report

Variant	rs73748509
Chromosome Location	chr6:70072204-70072205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10455224	1.00[ASN][1000 genomes]
rs10485250	1.00[ASN][1000 genomes]
rs1283468	1.00[ASN][1000 genomes]
rs1283472	1.00[ASN][1000 genomes]
rs1296346	1.00[ASN][1000 genomes]
rs1321973	1.00[ASN][1000 genomes]
rs1328725	1.00[ASN][1000 genomes]
rs1410700	1.00[ASN][1000 genomes]
rs1410701	1.00[ASN][1000 genomes]
rs17748715	1.00[ASN][1000 genomes]
rs35810215	1.00[ASN][1000 genomes]
rs3757056	1.00[ASN][1000 genomes]
rs4142263	0.91[ASN][1000 genomes]
rs6911011	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv463149	chr6:70007450-70097588	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv603635	chr6:70007450-70097588	Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70049600-70080600	Weak transcription	Fetal Brain Male	brain
2	chr6:70054600-70098600	Weak transcription	Brain Anterior Caudate	brain
3	chr6:70054600-70100600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:70054800-70080600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:70059200-70083200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:70060000-70078200	Weak transcription	Fetal Lung	lung
7	chr6:70063000-70080600	Weak transcription	Brain Germinal Matrix	brain
8	chr6:70066200-70073400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:70066600-70080600	Weak transcription	Fetal Brain Female	brain
10	chr6:70071400-70078600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:70071600-70073200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:70072200-70072600	Enhancers	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links