Variant report

Variant	rs73749313
Chromosome Location	chr6:70577828-70577829
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60306811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749314	0.92[AFR][1000 genomes]
rs73749317	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70575800-70578000	Active TSS	Right Atrium	heart
2	chr6:70575800-70578200	Active TSS	GM12878-XiMat	blood
3	chr6:70576000-70578000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:70576000-70578000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr6:70576000-70578000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:70576000-70578000	Active TSS	Right Ventricle	heart
7	chr6:70576000-70578200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:70576200-70578000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr6:70576200-70578000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
10	chr6:70576200-70578000	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr6:70576200-70578200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:70576200-70578200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr6:70576200-70578200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr6:70576200-70578400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr6:70576400-70578000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:70576400-70578000	Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr6:70576400-70578000	Bivalent/Poised TSS	Fetal Brain Female	brain
18	chr6:70576400-70578000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
19	chr6:70576600-70578000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:70576600-70578200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:70576800-70578000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:70576800-70578000	Active TSS	Brain Hippocampus Middle	brain
23	chr6:70576800-70578000	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr6:70577000-70578000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:70577000-70578000	Active TSS	Brain Angular Gyrus	brain
26	chr6:70577000-70578000	Bivalent Enhancer	Fetal Brain Male	brain
27	chr6:70577000-70578000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
28	chr6:70577000-70578200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:70577200-70578000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:70577200-70578000	Bivalent/Poised TSS	Thymus	Thymus
31	chr6:70577400-70578000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
32	chr6:70577400-70578000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:70577400-70578000	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:70577400-70578000	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr6:70577400-70579000	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr6:70577600-70578000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:70577600-70578000	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
38	chr6:70577600-70578000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr6:70577600-70578000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:70577600-70578000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr6:70577600-70578000	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
42	chr6:70577600-70578000	Flanking Bivalent TSS/Enh	Fetal Lung	lung
43	chr6:70577600-70578000	Flanking Active TSS	Rectal Smooth Muscle	rectum
44	chr6:70577600-70578200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
45	chr6:70577600-70578200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr6:70577600-70578600	Enhancers	Fetal Heart	heart
47	chr6:70577600-70579000	Flanking Active TSS	Primary B cells from peripheral blood	blood
48	chr6:70577800-70578000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:70577800-70578000	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
50	chr6:70577800-70578000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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