Variant report

Variant	rs73749926
Chromosome Location	chr6:56337800-56337801
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56336959..56338872-chr6:56404795..56407459,2	K562	blood:

Variant related genes	Relation type
ENSG00000151914	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11965750	1.00[AMR][1000 genomes]
rs16887940	1.00[AMR][1000 genomes]
rs34804434	1.00[AMR][1000 genomes]
rs41271850	0.84[AFR][1000 genomes]
rs56159731	1.00[AMR][1000 genomes]
rs60139655	1.00[AMR][1000 genomes]
rs73747832	0.84[AFR][1000 genomes]
rs73749927	1.00[AMR][1000 genomes]
rs73749936	1.00[AMR][1000 genomes]
rs73749938	1.00[AMR][1000 genomes]
rs73749945	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv885912	chr6:56327849-56458836	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56308800-56373800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:56315000-56347200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:56315000-56349800	Strong transcription	HSMM	muscle
4	chr6:56315600-56371000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:56317200-56342800	Strong transcription	Muscle Satellite Cultured Cells	--
6	chr6:56318000-56340600	Strong transcription	Fetal Intestine Large	intestine
7	chr6:56319000-56348200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:56319200-56340400	Strong transcription	NH-A	brain
9	chr6:56319200-56348400	Strong transcription	NHDF-Ad	bronchial
10	chr6:56319400-56343600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:56319400-56344200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:56320000-56338800	Strong transcription	Liver	Liver
13	chr6:56321000-56343400	Strong transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:56321200-56343800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:56322200-56339000	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:56322200-56349200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:56322400-56344200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:56322600-56348200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:56324800-56340400	Weak transcription	Spleen	Spleen
20	chr6:56325000-56340000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:56325000-56346600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:56327200-56338800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:56327200-56351400	Weak transcription	Fetal Thymus	thymus
24	chr6:56327600-56340600	Weak transcription	Stomach Mucosa	stomach
25	chr6:56328600-56340600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:56328600-56362000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:56329200-56373800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:56329400-56340600	Weak transcription	Colonic Mucosa	Colon
29	chr6:56330000-56351400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:56330000-56372400	Weak transcription	Lung	lung
31	chr6:56330200-56347200	Weak transcription	Small Intestine	intestine
32	chr6:56330200-56357400	Weak transcription	Esophagus	oesophagus
33	chr6:56330400-56340600	Weak transcription	Fetal Stomach	stomach
34	chr6:56331200-56340400	Weak transcription	Fetal Intestine Small	intestine
35	chr6:56332200-56339800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr6:56332800-56342400	Strong transcription	HSMMtube	muscle
37	chr6:56332800-56346000	Strong transcription	Adipose Nuclei	Adipose
38	chr6:56332800-56349200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:56333000-56338400	Strong transcription	Fetal Kidney	kidney
40	chr6:56333000-56339000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:56333000-56344400	Strong transcription	GM12878-XiMat	blood
42	chr6:56333000-56350000	Strong transcription	HMEC	breast
43	chr6:56333200-56338800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:56333200-56338800	Strong transcription	Colon Smooth Muscle	Colon
45	chr6:56333200-56338800	Strong transcription	Left Ventricle	heart
46	chr6:56333200-56338800	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:56333200-56339000	Strong transcription	HepG2	liver
48	chr6:56333200-56339400	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr6:56333200-56340800	Strong transcription	Fetal Lung	lung
50	chr6:56333200-56341000	Strong transcription	Osteobl	bone

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