Variant report

Variant	rs73751409
Chromosome Location	chr5:37890710-37890711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11957138	1.00[EUR][1000 genomes]
rs73748978	1.00[EUR][1000 genomes]
rs73748981	1.00[EUR][1000 genomes]
rs73751131	1.00[EUR][1000 genomes]
rs73751147	1.00[EUR][1000 genomes]
rs73751403	1.00[AMR][1000 genomes]
rs73751407	1.00[EUR][1000 genomes]
rs73751408	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751411	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv881401	chr5:37849688-37901408	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028115	chr5:37882426-37936352	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37886400-37890800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:37887000-37892400	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:37887200-37892600	Weak transcription	Ovary	ovary
4	chr5:37887800-37890800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:37888000-37891000	Enhancers	HMEC	breast
6	chr5:37888200-37890800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:37888200-37891000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:37888600-37890800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:37889400-37893800	Enhancers	Liver	Liver
10	chr5:37889600-37890800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:37890400-37890800	Flanking Active TSS	NHEK	skin
12	chr5:37890600-37890800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:37890600-37890800	Active TSS	HSMM	muscle
14	chr5:37890600-37892400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:37890600-37892400	Weak transcription	HSMMtube	muscle
16	chr5:37890600-37892400	Weak transcription	NHDF-Ad	bronchial
17	chr5:37890600-37893000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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