Variant report

Variant	rs73753244
Chromosome Location	chr6:73814671-73814672
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs61692084	0.89[AFR][1000 genomes]
rs73753245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753246	1.00[AFR][1000 genomes]
rs73753248	1.00[AMR][1000 genomes]
rs73753249	1.00[AMR][1000 genomes]
rs73753250	1.00[AMR][1000 genomes]
rs73753251	1.00[AMR][1000 genomes]
rs73753254	1.00[AMR][1000 genomes]
rs73753255	1.00[AMR][1000 genomes]
rs73753257	1.00[AMR][1000 genomes]
rs73753258	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73807600-73815800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73810000-73815800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:73813000-73830200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:73813800-73821000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:73814200-73814800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73814200-73821000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:73814400-73814800	Enhancers	Colon Smooth Muscle	Colon
9	chr6:73814400-73815200	Strong transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:73814600-73815000	Active TSS	Stomach Smooth Muscle	stomach
11	chr6:73814600-73830200	Weak transcription	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links