Variant report

Variant	rs73754254
Chromosome Location	chr5:52853385-52853386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs56069975	1.00[AFR][1000 genomes]
rs56682747	1.00[AFR][1000 genomes]
rs56848052	1.00[AFR][1000 genomes]
rs57292254	1.00[AFR][1000 genomes]
rs58915856	1.00[AFR][1000 genomes]
rs59431273	1.00[AFR][1000 genomes]
rs60419326	1.00[AFR][1000 genomes]
rs61695021	1.00[AFR][1000 genomes]
rs73754255	1.00[AFR][1000 genomes]
rs73754257	1.00[AFR][1000 genomes]
rs73754258	1.00[AFR][1000 genomes]
rs73754259	0.83[AFR][1000 genomes]
rs73754260	1.00[AFR][1000 genomes]
rs73754266	1.00[AFR][1000 genomes]
rs73754269	1.00[AFR][1000 genomes]
rs73754270	1.00[AFR][1000 genomes]
rs73754272	0.85[AFR][1000 genomes]
rs73754273	1.00[AFR][1000 genomes]
rs73754276	1.00[AFR][1000 genomes]
rs73754277	1.00[AFR][1000 genomes]
rs73754278	1.00[AFR][1000 genomes]
rs73754280	1.00[AFR][1000 genomes]
rs73754283	1.00[AFR][1000 genomes]
rs73754285	1.00[AFR][1000 genomes]
rs73754286	1.00[AFR][1000 genomes]
rs73754287	1.00[AFR][1000 genomes]
rs73754295	1.00[AFR][1000 genomes]
rs73754297	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1032632	chr5:52667145-53655624	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv880868	chr5:52799618-53002783	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv880689	chr5:52847995-53002783	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52851800-52854400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:52853000-52853400	Enhancers	NHEK	skin
3	chr5:52853000-52853600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:52853000-52853800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:52853000-52853800	Enhancers	HMEC	breast
6	chr5:52853200-52853600	Enhancers	Osteobl	bone
7	chr5:52853200-52853800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links