Variant report

Variant	rs73754627
Chromosome Location	chr6:74130184-74130185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:74099986-74112890..6:74129954-74133463	GM12878	blood:
2	6:74078047-74099067..6:74129954-74133463	Hela-S3	cervix:
3	6:74062967-74076046..6:74129954-74133463	Hela-S3	cervix:
4	chr6:74104942..74106987-chr6:74128307..74130235,2	K562	blood:

Variant related genes	Relation type
ENSG00000235174	Chromatin interaction
ENSG00000203907	Chromatin interaction
ENSG00000238464	Chromatin interaction
ENSG00000231332	Chromatin interaction
ENSG00000203908	Chromatin interaction
ENSG00000203909	Chromatin interaction
ENSG00000224221	Chromatin interaction
ENSG00000080007	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12111517	1.00[AMR][1000 genomes]
rs16883692	1.00[EUR][1000 genomes]
rs35097680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74115000-74131000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:74115800-74131200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:74117800-74131800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:74119200-74149000	Weak transcription	Fetal Intestine Large	intestine
5	chr6:74120600-74131200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:74122200-74131200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:74122400-74131200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:74122800-74131400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:74123000-74130200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr6:74123200-74160200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:74124000-74131400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:74124400-74131400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:74124400-74139800	Weak transcription	NHDF-Ad	bronchial
14	chr6:74124600-74131200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:74124600-74131400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr6:74124600-74131400	Weak transcription	Adipose Nuclei	Adipose
17	chr6:74124800-74131200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:74124800-74131400	Weak transcription	A549	lung
19	chr6:74125200-74131400	Weak transcription	Left Ventricle	heart
20	chr6:74125200-74131600	Weak transcription	Aorta	Aorta
21	chr6:74125400-74160800	Weak transcription	Gastric	stomach
22	chr6:74125600-74131800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:74125800-74131200	Weak transcription	Fetal Intestine Small	intestine
24	chr6:74126200-74131400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:74126400-74137200	Weak transcription	Placenta	Placenta
26	chr6:74126600-74154200	Weak transcription	Thymus	Thymus
27	chr6:74127400-74131400	Weak transcription	Lung	lung
28	chr6:74127400-74155800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:74127600-74135400	Strong transcription	Primary B cells from peripheral blood	blood
30	chr6:74127600-74147000	Weak transcription	HUVEC	blood vessel
31	chr6:74127800-74133600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:74128200-74131200	Weak transcription	Fetal Stomach	stomach
33	chr6:74128200-74131400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:74128200-74131400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:74128200-74131600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:74128200-74132000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:74128400-74131200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:74128400-74131200	Weak transcription	HSMM	muscle
39	chr6:74128400-74133400	Enhancers	Primary T cells fromperipheralblood	blood
40	chr6:74128600-74131200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:74128600-74131200	Weak transcription	Osteobl	bone
42	chr6:74129000-74131000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr6:74129000-74131000	Weak transcription	K562	blood
44	chr6:74129000-74131200	Weak transcription	Hela-S3	cervix
45	chr6:74129000-74132000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:74129000-74149200	Weak transcription	Ovary	ovary
47	chr6:74129000-74160600	Weak transcription	HSMMtube	muscle
48	chr6:74129200-74160200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:74129400-74134600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:74129600-74131200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links