Variant report

Variant	rs73755029
Chromosome Location	chr5:30248411-30248412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11953269	0.83[EUR][1000 genomes]
rs11958611	0.84[AMR][1000 genomes]
rs28769688	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4282330	0.82[EUR][1000 genomes]
rs55913729	0.86[AMR][1000 genomes]
rs57503003	0.82[EUR][1000 genomes]
rs58624784	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59615654	0.82[EUR][1000 genomes]
rs60373268	0.97[EUR][1000 genomes]
rs6860184	0.94[EUR][1000 genomes]
rs73754648	0.84[AMR][1000 genomes]
rs73754668	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881635	chr5:30122190-30371238	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv915858	chr5:30176470-31018294	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv881357	chr5:30226419-30371238	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521010	chr5:30242594-30257642	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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