Variant report

Variant	rs73758208
Chromosome Location	chr5:54127259-54127260
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58026447	1.00[AMR][1000 genomes]
rs73755292	1.00[AMR][1000 genomes]
rs73755298	1.00[AMR][1000 genomes]
rs73755300	1.00[AMR][1000 genomes]
rs73758210	1.00[AMR][1000 genomes]
rs73758216	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54117200-54138000	Weak transcription	Aorta	Aorta
2	chr5:54118000-54128600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:54118600-54129200	Weak transcription	Placenta	Placenta
4	chr5:54121600-54127400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:54125200-54128600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr5:54125200-54128800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr5:54125200-54129400	Weak transcription	Spleen	Spleen
8	chr5:54126000-54128200	Enhancers	Fetal Heart	heart
9	chr5:54126000-54132200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:54126400-54127400	Weak transcription	Fetal Stomach	stomach
11	chr5:54126400-54128800	Weak transcription	Fetal Muscle Leg	muscle
12	chr5:54126400-54129200	Weak transcription	Ovary	ovary
13	chr5:54126800-54133400	Enhancers	NHLF	lung
14	chr5:54127000-54127600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:54127000-54128200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:54127000-54129400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:54127200-54128000	Enhancers	NHDF-Ad	bronchial
18	chr5:54127200-54129600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:54127200-54129600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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