Variant report

Variant	rs73759514
Chromosome Location	chr5:57926048-57926049
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1019470	1.00[EUR][1000 genomes]
rs16888343	1.00[EUR][1000 genomes]
rs16888349	1.00[EUR][1000 genomes]
rs58800905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60640515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73759508	1.00[EUR][1000 genomes]
rs73759510	1.00[EUR][1000 genomes]
rs73759513	1.00[EUR][1000 genomes]
rs73759528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73759529	1.00[EUR][1000 genomes]
rs73759530	1.00[EUR][1000 genomes]
rs73759531	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57921000-57933000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:57924200-57926200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:57924200-57927200	Enhancers	Fetal Intestine Large	intestine
4	chr5:57924200-57927200	Enhancers	Fetal Intestine Small	intestine
5	chr5:57924200-57928400	Enhancers	Stomach Mucosa	stomach
6	chr5:57924400-57926200	Enhancers	Liver	Liver
7	chr5:57925200-57926600	Enhancers	HepG2	liver
8	chr5:57925200-57926800	Enhancers	Duodenum Mucosa	Duodenum
9	chr5:57925600-57926600	Weak transcription	Pancreas	Pancrea
10	chr5:57925600-57926800	Weak transcription	Gastric	stomach
11	chr5:57925600-57927000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:57925600-57927000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr5:57925800-57926400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:57925800-57926800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:57926000-57927000	Weak transcription	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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