Variant report

Variant	rs73760521
Chromosome Location	chr5:61209462-61209463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6895859	1.00[AMR][1000 genomes]
rs73760519	0.95[AFR][1000 genomes]
rs73760524	1.00[AMR][1000 genomes]
rs73760525	1.00[AMR][1000 genomes]
rs73760529	1.00[AMR][1000 genomes]
rs73760534	1.00[AMR][1000 genomes]
rs73760535	1.00[AMR][1000 genomes]
rs73760536	1.00[AMR][1000 genomes]
rs73760550	1.00[AMR][1000 genomes]
rs73760557	1.00[AMR][1000 genomes]
rs73760563	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881723	chr5:61183375-61311715	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61207000-61211600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:61207800-61209600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:61208800-61211600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:61209000-61211200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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