Variant report

Variant	rs73762939
Chromosome Location	chr6:110283636-110283637
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56143104	1.00[EUR][1000 genomes]
rs57085998	1.00[EUR][1000 genomes]
rs58191833	1.00[EUR][1000 genomes]
rs58339006	1.00[EUR][1000 genomes]
rs59147648	1.00[EUR][1000 genomes]
rs6912603	1.00[EUR][1000 genomes]
rs73765032	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv523774	chr6:110232051-110288776	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv886534	chr6:110232051-110289593	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv604486	chr6:110232051-110290678	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv526261	chr6:110281707-110285415	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110282400-110284200	Enhancers	HMEC	breast
2	chr6:110282600-110283800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:110282600-110285800	Enhancers	NHEK	skin
4	chr6:110282800-110286800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:110283200-110283800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:110283400-110284000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:110283600-110283800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:110283600-110283800	ZNF genes & repeats	Esophagus	oesophagus
9	chr6:110283600-110284800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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