Variant report

Variant	rs73766211
Chromosome Location	chr6:117802226-117802227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr6:117802063-117802799	HepG2	liver:	n/a	n/a
2	FOXA1	chr6:117802201-117802851	HepG2	liver:	n/a	n/a
3	TEAD4	chr6:117801774-117802940	HepG2	liver:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:117799806..117802489-chr6:117925663..117927637,2	MCF-7	breast:
2	chr6:101327181..101330084-chr6:117801293..117803939,2	K562	blood:
3	chr6:117798788..117807313-chr6:117921918..117925735,11	MCF-7	breast:
4	chr6:117802223..117804604-chr6:117922456..117924196,2	MCF-7	breast:

No data

Variant related genes	Relation type
DCBLD1	TF binding region
ENSG00000112249	Chromatin interaction
ENSG00000260000	Chromatin interaction
ENSG00000047932	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17079286	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4946257	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73766212	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73766221	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73766223	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374660	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9385016	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385017	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387483	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9401009	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117798600-117802600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:117799800-117803000	Weak transcription	Ovary	ovary
3	chr6:117800000-117802400	Weak transcription	Stomach Mucosa	stomach
4	chr6:117800000-117802600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:117800000-117802600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:117800000-117803200	Weak transcription	HSMM	muscle
7	chr6:117800200-117802600	Weak transcription	Brain Anterior Caudate	brain
8	chr6:117800200-117802600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:117800200-117802600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:117800200-117802600	Weak transcription	Fetal Intestine Large	intestine
11	chr6:117800200-117803000	Weak transcription	NHDF-Ad	bronchial
12	chr6:117800200-117803200	Weak transcription	HSMMtube	muscle
13	chr6:117800200-117803400	Weak transcription	Small Intestine	intestine
14	chr6:117800400-117802600	Weak transcription	GM12878-XiMat	blood
15	chr6:117801400-117802400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:117801400-117802800	Weak transcription	Liver	Liver
17	chr6:117801800-117802600	Flanking Active TSS	HepG2	liver
18	chr6:117801800-117802800	Enhancers	A549	lung
19	chr6:117802000-117802400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
20	chr6:117802000-117802400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:117802000-117802600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr6:117802000-117802800	Enhancers	Fetal Intestine Small	intestine
23	chr6:117802200-117803200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:117802200-117803200	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links